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The map label for this gene is ybbB [H]

Identifier: 83719270

GI number: 83719270

Start: 2693178

End: 2694284

Strand: Direct

Name: ybbB [H]

Synonym: BTH_I2369

Alternate gene names: 83719270

Gene position: 2693178-2694284 (Clockwise)

Preceding gene: 83719030

Following gene: 83721629

Centisome position: 70.7

GC content: 59.62

Gene sequence:

>1107_bases
GTGCAGCGACATCACACATTCCGCCCTCACTCTATCCGGTGCCTCCCGGCTCTGTTCGAGCGCTTCCTCGCGGAACACGT
CGAGCATTACGCTAAGCGCCCCTTTCCGCCCGAGCTTTCACCCGTGACCCCGTTTGTTGCAAGCATAAGAAACTTGAGGC
CACCCATGCATTCCGTCACTACCCGCGACAACATCCCCGTCTCAGCCGATGCGCCCACATGGCTTCACTATCAAGACCGC
GATCATGCGAGAGTGACTCCGCTCATGCAGACCGACGTATGCGGCATGTACCGGTGCGAAGTATTGTCCGAGACATACCA
GGTCGAGATCGAGAGCAATCGCCACCTGTTTTTCCTATACGACCGGCACGCCGTGTCCACGGGCAGCACGTGGATCGACG
GGCGGCGCGTCGCAGGGCCGCGCCGGCTCGACGTCGGGCTCGACTACTTGCCGCCGCTGCACGCGCTCAGTTGCAAGGGC
GGCGCCGGCGGCAAGGTCAGCTACTTCATATTTGCCGTGGATGCTCGCGAAATGGGCTTCGTGAACAGCGCGTCCTCGAT
GCTCAAGCCGGCGATGAACGTCACCGGCGATGTGCTGCTCAAGCTCATGCGGCACATCGTGGACACGGCGACCAATCGCC
ACAAATGGCCGTACTTCCACGATCACATGGCGGTCGCGCTGCTGTCCGAGATGCTCCGGCTTCAATCGACCGAGGACAAC
GCGAGCGGCAAGAGATTCTCCAGCGCGCAGCACCGCCGGCTGACCCATCACATCGACGAGCATTTGAATTCGTCGATCAC
TTTGAAGGACCTGGCTGGCGTGGTCGGGCTCAGCGTTTACCATTTTTCCCGTACGTTCAAGCATCATTTCGGCGTGCCGC
CGTGCAAATACATCACGGAAAGAAGAATCGAGAAAGCAAAACGGCTGATGCGCCGGGGAAACATGCGGCTGCTGGACATC
GCGATCGAAGTCGGCTTCCAAAGCAACACTCAGCTGTCGCGCTCGTTCCGCCGGGTCACCGGGCAATCTCCGCGCTGCTA
TCTGATGTCCGTTGACGAAGTCGCGCAAACTACGTATATCGAAACACAGTCGTCACAATTCAGCTGA

Upstream 100 bases:

>100_bases
GCTTCGCCTACGTCACAGCGAGTTCGCGCGAGTCCGCGCAAGTCCGCGGGAAGCGCCTTCGCTCACCGCCCTCGAATCAG
GCCGCATAGCACTGGATCAT

Downstream 100 bases:

>100_bases
CAACGATGTTGCCCCGCGTCGCGGTCGCCCGTGCTGCGCGACTCATACGGTTCGATCACCGACGAGCCACAAGCGAAACG
GAGTCGCCGCCGGCACGAGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MQRHHTFRPHSIRCLPALFERFLAEHVEHYAKRPFPPELSPVTPFVASIRNLRPPMHSVTTRDNIPVSADAPTWLHYQDR
DHARVTPLMQTDVCGMYRCEVLSETYQVEIESNRHLFFLYDRHAVSTGSTWIDGRRVAGPRRLDVGLDYLPPLHALSCKG
GAGGKVSYFIFAVDAREMGFVNSASSMLKPAMNVTGDVLLKLMRHIVDTATNRHKWPYFHDHMAVALLSEMLRLQSTEDN
ASGKRFSSAQHRRLTHHIDEHLNSSITLKDLAGVVGLSVYHFSRTFKHHFGVPPCKYITERRIEKAKRLMRRGNMRLLDI
AIEVGFQSNTQLSRSFRRVTGQSPRCYLMSVDEVAQTTYIETQSSQFS

Sequences:

>Translated_368_residues
MQRHHTFRPHSIRCLPALFERFLAEHVEHYAKRPFPPELSPVTPFVASIRNLRPPMHSVTTRDNIPVSADAPTWLHYQDR
DHARVTPLMQTDVCGMYRCEVLSETYQVEIESNRHLFFLYDRHAVSTGSTWIDGRRVAGPRRLDVGLDYLPPLHALSCKG
GAGGKVSYFIFAVDAREMGFVNSASSMLKPAMNVTGDVLLKLMRHIVDTATNRHKWPYFHDHMAVALLSEMLRLQSTEDN
ASGKRFSSAQHRRLTHHIDEHLNSSITLKDLAGVVGLSVYHFSRTFKHHFGVPPCKYITERRIEKAKRLMRRGNMRLLDI
AIEVGFQSNTQLSRSFRRVTGQSPRCYLMSVDEVAQTTYIETQSSQFS
>Mature_368_residues
MQRHHTFRPHSIRCLPALFERFLAEHVEHYAKRPFPPELSPVTPFVASIRNLRPPMHSVTTRDNIPVSADAPTWLHYQDR
DHARVTPLMQTDVCGMYRCEVLSETYQVEIESNRHLFFLYDRHAVSTGSTWIDGRRVAGPRRLDVGLDYLPPLHALSCKG
GAGGKVSYFIFAVDAREMGFVNSASSMLKPAMNVTGDVLLKLMRHIVDTATNRHKWPYFHDHMAVALLSEMLRLQSTEDN
ASGKRFSSAQHRRLTHHIDEHLNSSITLKDLAGVVGLSVYHFSRTFKHHFGVPPCKYITERRIEKAKRLMRRGNMRLLDI
AIEVGFQSNTQLSRSFRRVTGQSPRCYLMSVDEVAQTTYIETQSSQFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 42171; Mature: 42171

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRHHTFRPHSIRCLPALFERFLAEHVEHYAKRPFPPELSPVTPFVASIRNLRPPMHSVT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHCC
TRDNIPVSADAPTWLHYQDRDHARVTPLMQTDVCGMYRCEVLSETYQVEIESNRHLFFLY
CCCCCCCCCCCCCEEEECCCCCCEECCCHHHCCCHHHHHHHHCCEEEEEEECCCEEEEEE
DRHAVSTGSTWIDGRRVAGPRRLDVGLDYLPPLHALSCKGGAGGKVSYFIFAVDAREMGF
ECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHEECCCCCCCEEEEEEEEECHHHHCC
VNSASSMLKPAMNVTGDVLLKLMRHIVDTATNRHKWPYFHDHMAVALLSEMLRLQSTEDN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ASGKRFSSAQHRRLTHHIDEHLNSSITLKDLAGVVGLSVYHFSRTFKHHFGVPPCKYITE
CCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RRIEKAKRLMRRGNMRLLDIAIEVGFQSNTQLSRSFRRVTGQSPRCYLMSVDEVAQTTYI
HHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHEE
ETQSSQFS
ECCCCCCC
>Mature Secondary Structure
MQRHHTFRPHSIRCLPALFERFLAEHVEHYAKRPFPPELSPVTPFVASIRNLRPPMHSVT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHCC
TRDNIPVSADAPTWLHYQDRDHARVTPLMQTDVCGMYRCEVLSETYQVEIESNRHLFFLY
CCCCCCCCCCCCCEEEECCCCCCEECCCHHHCCCHHHHHHHHCCEEEEEEECCCEEEEEE
DRHAVSTGSTWIDGRRVAGPRRLDVGLDYLPPLHALSCKGGAGGKVSYFIFAVDAREMGF
ECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHEECCCCCCCEEEEEEEEECHHHHCC
VNSASSMLKPAMNVTGDVLLKLMRHIVDTATNRHKWPYFHDHMAVALLSEMLRLQSTEDN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
ASGKRFSSAQHRRLTHHIDEHLNSSITLKDLAGVVGLSVYHFSRTFKHHFGVPPCKYITE
CCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RRIEKAKRLMRRGNMRLLDIAIEVGFQSNTQLSRSFRRVTGQSPRCYLMSVDEVAQTTYI
HHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHEE
ETQSSQFS
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]