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The map label for this gene is ompR [H]

Identifier: 83721603

GI number: 83721603

Start: 1018871

End: 1019650

Strand: Direct

Name: ompR [H]

Synonym: BTH_I0893

Alternate gene names: 83721603

Gene position: 1018871-1019650 (Clockwise)

Preceding gene: 83720971

Following gene: 83718879

Centisome position: 26.75

GC content: 67.69

Gene sequence:

>780_bases
TTGCAGCAAATTGTTTCGCTCAGCCTCATCAACCCGCACGGTAAACTCCACGCCATGACTACTCAGATCCTCATCGTCGA
CGACGACCAAGAACTGCGCGATCTGCTGCGCGATTACCTCGTGCGGCAGGGCATCGAGGTATCGGTGCTGCACGACGCCG
CGTCGCTCGAGAAGCGCCTCGAGCGCGAGCGCCCCGATCTCATCGTGCTCGATCTGATGATGCCGGGCGTCGACGGCCTC
ACCGCGCTGCGCCAGTTGCGCGCGGCGGGCGACGACATTCCGGTGATCATGCTGACCGCGCGCGCGGACGACGTCGACCG
GATCGTCGGCCTCGAGCTCGGCGCGGACGATTACCTCGGCAAGCCGTTCAACCCGCGCGAGCTGCTCGCGCGCGCGCAGG
CGGTGCTGCGCCGCCGCCGCACGACGCCGTCGGCGGCGGCGCCCGAGCAGCGTGAGCCGTACGCGTTCGGCCGCTTCGTG
CTGGACTTCCAGTCGCGCACGCTGTCGGTCGACAGCAAGCCGGCGACGCTGTCGAGCAGCGAATTCGCGCTCTTGAAGAT
CTTCGTCAACCATGCGCTGCGCACGCTGACCCGCGAGCGCCTGCTCGAGTTGCTGCACGGCCCGGAGTACGACGGCACCG
ACCGCGGGATCGACGTGCAGGTCTGGCGCCTGCGCCGGATTCTCGAAACCGATCCGTCGACGCCGCGTTTCATCCAGACG
GTGCGCGGGCGCGGCTACGTGTTCGTGCCGAACGGCGAGGCTCATGCGCAAACCCATTGA

Upstream 100 bases:

>100_bases
ATGAGCAGCGTAGCCATACGCTGCCGCACCCGTGTTACGCGCGCCGCCGCCGCGATTACCGCGCATTACACTTCGCTTGC
GCGGTAATCCGCAGTAACCC

Downstream 100 bases:

>100_bases
TTCGCTGTTCGGGCGGCTCGCGCTCCTCGTCGTCGGCGTGCTGTTGTTGTCGCACTTCGCGTGGTACTTCGCGATCCGGC
TCGAGCGCAATCAGTTCCAG

Product: DNA-binding response regulator OmpR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQQIVSLSLINPHGKLHAMTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGL
TALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRTTPSAAAPEQREPYAFGRFV
LDFQSRTLSVDSKPATLSSSEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQT
VRGRGYVFVPNGEAHAQTH

Sequences:

>Translated_259_residues
MQQIVSLSLINPHGKLHAMTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGL
TALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRTTPSAAAPEQREPYAFGRFV
LDFQSRTLSVDSKPATLSSSEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQT
VRGRGYVFVPNGEAHAQTH
>Mature_259_residues
MQQIVSLSLINPHGKLHAMTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGL
TALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRTTPSAAAPEQREPYAFGRFV
LDFQSRTLSVDSKPATLSSSEFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQT
VRGRGYVFVPNGEAHAQTH

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=50.6493506493506, Blast_Score=234, Evalue=3e-63,
Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=38.7931034482759, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1790863, Length=234, Percent_Identity=36.7521367521368, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=37.5545851528384, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=34.8936170212766, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI2367329, Length=233, Percent_Identity=40.343347639485, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787229, Length=234, Percent_Identity=35.042735042735, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1786784, Length=233, Percent_Identity=36.0515021459227, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=34.070796460177, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=36.6379310344828, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=36.5638766519824, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=33.7719298245614, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=29.5154185022026, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790552, Length=232, Percent_Identity=33.1896551724138, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=34.2592592592593, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=34.2592592592593, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=35.6435643564356, Blast_Score=63, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=170, Percent_Identity=27.6470588235294, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29258; Mature: 29258

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIVSLSLINPHGKLHAMTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRL
CCCEEEEEEECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHH
ERERPDLIVLDLMMPGVDGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLG
HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHEEEEECCCCCCC
KPFNPRELLARAQAVLRRRRTTPSAAAPEQREPYAFGRFVLDFQSRTLSVDSKPATLSSS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEECCCEEECCCCCCCCCCC
EFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQT
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VRGRGYVFVPNGEAHAQTH
HCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MQQIVSLSLINPHGKLHAMTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRL
CCCEEEEEEECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHH
ERERPDLIVLDLMMPGVDGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLG
HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHEEEEECCCCCCC
KPFNPRELLARAQAVLRRRRTTPSAAAPEQREPYAFGRFVLDFQSRTLSVDSKPATLSSS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEECCCEEECCCCCCCCCCC
EFALLKIFVNHALRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQT
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VRGRGYVFVPNGEAHAQTH
HCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]