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The map label for this gene is cph2 [H]

Identifier: 83721534

GI number: 83721534

Start: 585303

End: 587639

Strand: Direct

Name: cph2 [H]

Synonym: BTH_I0519

Alternate gene names: 83721534

Gene position: 585303-587639 (Clockwise)

Preceding gene: 83718603

Following gene: 83719105

Centisome position: 15.37

GC content: 71.89

Gene sequence:

>2337_bases
ATGAACGCGACTTGCCGTTTTCGGCGATGCATCGATGGCTTCCGTCCCCAGTCGACCGTCTCGCGGACCGAACGCGCGGT
GCGTCCGGTCCGTGCGCCCGGCCGTCGCGATCGCGCTGACGGCGGCCTTGCTCGGCGCGGCGCTGCTGTCCGCCGAGCTG
CACGGCGTCGTGCCCGGCCGCGCGCCGACGCGATCGAGCGCGTGTTCGGCGCGATCGGCATGCGCGAGCGGCGCGCGCAC
GATGCGACGTGCACGGCGGGTGCGAACGCGTCGGATGCGCCGCGTGCATGGCGGTTCGAACCCGCTCGCGCGTACACGGC
CGCCGCCGCGCATCCGGCGCGGGGCGAGGCGCGCGGCCCCGGCGTCGACGTTGCGCCGAACCCGATGCCGCGATCGCCCG
AAGCGGGCGCCGCGGCGCTCCCACAATCGCAACCGTACCTGGACATGATCGATTCGACGTTTCGCGAGCCGGCCGCCATC
GCGCTCGCTTTGAGCCTGCTCGGCATGCTCGCGCTTGCGCTGCTGCCCGTGTTCCGGATCAGACGGCTCGCGCTTCGCCT
CGGCGAGGCGGAGGGCGCGCTCGCGATGAGCGAAGCGCGAGCGCGCGCGGCGCTCGTCGCCGTCGGCGACGGCGTGATCT
TCACCGGGCGGGCGGGGCGAGTCGAATGCTTGAATCCGGCGGCGGAGCAGTTGATCGGCATGCTCGCCGACGATTGTCGC
GGCCGCCCGCTCGTGTCGACGCTGCGCCTCGCGCGCGCGGGCGCCGAGGCGGGCGGCCCGTCCGACGTGTTCGATTGGTC
CGATGCGTGCGCTTCGTCCGGTTCGGCCGCCTCGTGCGACGCGCCGCTCGGCGGTCTCGAGGATGGCGGCAGTTGCGACG
CGACGCTGTACCGCGCCGACGGCGGCGCGATCGCCGTGCGCGCCACCGCGTCGTCGATCGCGCCGCCGTCCGGGCACGCG
CGGCGCGCATGCGGCAGCGGCCGCGTGCTCGTGCTGAAGAGTCTCGCGGCCGAGCACGATCTCGTGCGCCGCCTGGCGCG
GCAGACGACGCACGATCCGCTCACCGGCCTGCCGAATCGCGCCGAGTTCGAACGCCGCGTCGATTTCGCGCTCGCGGCCA
ACGTGCGCGGGCCGGTCGCGCTGCTGTTCATCGATCTCGACTGCTTTCGGATCGTCAACGACACGTGCGGCTACGCGGCG
GGCGACGCGATGCTCGCCGCGCTCGCCGCGCGCCTCGTGGCGTGCGCGGCGTCGACCGACGTCGTCGCGCGGCTCGGCGG
CGACGAATTCTGCGTGCTGCTCGACGCGGGCGACGAAGCGTCGGCCGCGTGCGCGGCCGAGCGCCTGCGCGCGAGCGTCG
ACGGTTTCGTGTTCGTCTGGGAGGGCCAGCCGTTCTCGGTGACGGCGAGCGTCGGCGTCGCGTTGCTCGGCGCGCCGGAC
CGCGTGCCGCGCGTCGAGGATGCGGTGCGCCTTGCCGGCATCGCGTGCGACTTCGCGAAGGCGCGCGGGCGCAACCGCGT
GCAACTGGCCGATCCGCACGACCACGAGCTCGCGCACCATATCAATGACGTGTCGTGGTGCGCGCGCGTGAGGCAGGCGC
TCGAATGCGACGATTTCTGCCTGTACGTGCAGCCGATCGTCGATACGGCGACGCAAGGCGCGAGCCGCCCGCCGCGCGCG
AGGCGGGGCGAGCTGCTGCTGCGGATGGGCGCGCTCGGCGAGCGCGAGGGCGTCGCGCCGCCGGGGCATTTCATTCGCGC
GGCCGAACGCTACGGGCTCGTGACGGACATCGACCGCTGGGTCGTGCGCACGGTGTTCGACGCGCTCGCTCGCGCGCGCA
GCCGGCGCTTCAGCGAATACGCGATCAATCTGTCGGGAATCTCGATCGGCGACGAGCGCTTTCTCGATTACGTGCTCGAG
CAGTTCGCACGGACGCGCGTCGCGCCCGCGCTGATCTGCTTCGAGATCACCGAGACGGCCGCGATCGCGAACCTCGCCGG
CGCGCTGCGATTCATGCATGAGCTCAAGGCGCTCGGCTGCCGGTTCGCGCTCGACGATTTCGGCTCGGGGATGGCGTCGC
TCAGTTATCTGAAGCAACTGCCCGTCGAGTACCTGAAGATCGACGGCAGCTTCGTGACGGGCATCGCGAACGACGCAGCG
AGCCTCGACATCGTCGCGTCGATCAACGACATCGGGCATGCGATGAATTGCAAGACGATCGCCGAGTACGTCGATAGCGC
CGCGACGCTGCAAAAGCTCGCCGCGCTCGGCGTCGATTATGCGCAGGGCTATTACATCGGGCGGCCCGTGCCGTGGCGCG
AGGCGGCGCGTTCGTAG

Upstream 100 bases:

>100_bases
GCATTGCGATGTCGTGGATGATCGTATCGAGTTGAATGGGCGCAATCGAAATCGATTCGGCATCCGAATTTAGGACCGAT
TAATCGAATGCGCGCTCGAA

Downstream 100 bases:

>100_bases
CGCCGCGCCCGGCGGCGCGGGCGCCTCTCGCGTGCCGAATGCCCGGCGCCCGATCGCTTTGTCGCGTCACGAGCCGCGAG
CCGTCTATCCGCGCGGAGCG

Product: EAL/GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MNATCRFRRCIDGFRPQSTVSRTERAVRPVRAPGRRDRADGGLARRGAAVRRAARRRARPRADAIERVFGAIGMRERRAH
DATCTAGANASDAPRAWRFEPARAYTAAAAHPARGEARGPGVDVAPNPMPRSPEAGAAALPQSQPYLDMIDSTFREPAAI
ALALSLLGMLALALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLADDCR
GRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLYRADGGAIAVRATASSIAPPSGHA
RRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGLPNRAEFERRVDFALAANVRGPVALLFIDLDCFRIVNDTCGYAA
GDAMLAALAARLVACAASTDVVARLGGDEFCVLLDAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGVALLGAPD
RVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQALECDDFCLYVQPIVDTATQGASRPPRA
RRGELLLRMGALGEREGVAPPGHFIRAAERYGLVTDIDRWVVRTVFDALARARSRRFSEYAINLSGISIGDERFLDYVLE
QFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAA
SLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWREAARS

Sequences:

>Translated_778_residues
MNATCRFRRCIDGFRPQSTVSRTERAVRPVRAPGRRDRADGGLARRGAAVRRAARRRARPRADAIERVFGAIGMRERRAH
DATCTAGANASDAPRAWRFEPARAYTAAAAHPARGEARGPGVDVAPNPMPRSPEAGAAALPQSQPYLDMIDSTFREPAAI
ALALSLLGMLALALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLADDCR
GRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLYRADGGAIAVRATASSIAPPSGHA
RRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGLPNRAEFERRVDFALAANVRGPVALLFIDLDCFRIVNDTCGYAA
GDAMLAALAARLVACAASTDVVARLGGDEFCVLLDAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGVALLGAPD
RVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQALECDDFCLYVQPIVDTATQGASRPPRA
RRGELLLRMGALGEREGVAPPGHFIRAAERYGLVTDIDRWVVRTVFDALARARSRRFSEYAINLSGISIGDERFLDYVLE
QFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAA
SLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWREAARS
>Mature_778_residues
MNATCRFRRCIDGFRPQSTVSRTERAVRPVRAPGRRDRADGGLARRGAAVRRAARRRARPRADAIERVFGAIGMRERRAH
DATCTAGANASDAPRAWRFEPARAYTAAAAHPARGEARGPGVDVAPNPMPRSPEAGAAALPQSQPYLDMIDSTFREPAAI
ALALSLLGMLALALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLADDCR
GRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLYRADGGAIAVRATASSIAPPSGHA
RRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGLPNRAEFERRVDFALAANVRGPVALLFIDLDCFRIVNDTCGYAA
GDAMLAALAARLVACAASTDVVARLGGDEFCVLLDAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGVALLGAPD
RVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQALECDDFCLYVQPIVDTATQGASRPPRA
RRGELLLRMGALGEREGVAPPGHFIRAAERYGLVTDIDRWVVRTVFDALARARSRRFSEYAINLSGISIGDERFLDYVLE
QFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAA
SLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWREAARS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=585, Percent_Identity=27.5213675213675, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=29.7423887587822, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1788849, Length=445, Percent_Identity=28.9887640449438, Blast_Score=159, Evalue=7e-40,
Organism=Escherichia coli, GI87081921, Length=497, Percent_Identity=26.1569416498994, Blast_Score=149, Evalue=9e-37,
Organism=Escherichia coli, GI226510982, Length=474, Percent_Identity=25.9493670886076, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87082096, Length=246, Percent_Identity=31.7073170731707, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=32.7935222672065, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=27.7992277992278, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=26.4, Blast_Score=90, Evalue=7e-19,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=26.7441860465116, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.3658536585366, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=28.4046692607004, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=28.4090909090909, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786507, Length=267, Percent_Identity=26.2172284644195, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=132, Percent_Identity=34.8484848484849, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=33.5227272727273, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1788956, Length=134, Percent_Identity=36.5671641791045, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=34.6820809248555, Blast_Score=78, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=32, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=133, Percent_Identity=30.0751879699248, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=29.1208791208791, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=123, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 82892; Mature: 82892

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATCRFRRCIDGFRPQSTVSRTERAVRPVRAPGRRDRADGGLARRGAAVRRAARRRARP
CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
RADAIERVFGAIGMRERRAHDATCTAGANASDAPRAWRFEPARAYTAAAAHPARGEARGP
HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
GVDVAPNPMPRSPEAGAAALPQSQPYLDMIDSTFREPAAIALALSLLGMLALALLPVFRI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLADDCR
HHHHHHHCCCCCCHHHHHHHHHEEEEEECCCEEEECCCCCCEECCHHHHHHHHHHHHHCC
GRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLYRAD
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
GGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGLPNR
CCEEEEEECCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AEFERRVDFALAANVRGPVALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVACAASTD
HHHHHHHHHHEECCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
VVARLGGDEFCVLLDAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGVALLGAPD
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCEEEECCCC
RVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQALECDDFC
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
LYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGLVTDIDRW
EEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
VVRTVFDALARARSRRFSEYAINLSGISIGDERFLDYVLEQFARTRVAPALICFEITETA
HHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHEEEHHHHHH
AIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHEEECCCEEECCCCCCC
SLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWREAARS
CEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCCHHHHHCC
>Mature Secondary Structure
MNATCRFRRCIDGFRPQSTVSRTERAVRPVRAPGRRDRADGGLARRGAAVRRAARRRARP
CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
RADAIERVFGAIGMRERRAHDATCTAGANASDAPRAWRFEPARAYTAAAAHPARGEARGP
HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
GVDVAPNPMPRSPEAGAAALPQSQPYLDMIDSTFREPAAIALALSLLGMLALALLPVFRI
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLADDCR
HHHHHHHCCCCCCHHHHHHHHHEEEEEECCCEEEECCCCCCEECCHHHHHHHHHHHHHCC
GRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLYRAD
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
GGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGLPNR
CCEEEEEECCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AEFERRVDFALAANVRGPVALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVACAASTD
HHHHHHHHHHEECCCCCCEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
VVARLGGDEFCVLLDAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGVALLGAPD
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCEEEECCCC
RVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQALECDDFC
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
LYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGLVTDIDRW
EEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
VVRTVFDALARARSRRFSEYAINLSGISIGDERFLDYVLEQFARTRVAPALICFEITETA
HHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHEEEHHHHHH
AIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHEEECCCEEECCCCCCC
SLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWREAARS
CEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]