Click here to switch to the map view.

The map label for this gene is ydeR [H]

Identifier: 83721345

GI number: 83721345

Start: 3558522

End: 3559790

Strand: Direct

Name: ydeR [H]

Synonym: BTH_I3120

Alternate gene names: 83721345

Gene position: 3558522-3559790 (Clockwise)

Preceding gene: 83719201

Following gene: 83719003

Centisome position: 93.42

GC content: 74.31

Gene sequence:

>1269_bases
ATGAACTGCCCTGCCGATCTTCGCGCCGGCCCGGCCGCCGGAGAACCGCGCGCCGCTCCCGCTCCCACACTCACGCCTGC
GCTCACCGTGTTCTTTTCGGCGACGGTCGGTGTGATCGTGCTCGACCTGTTCGCCGCGCAGCCGTTGACGGGACCGATCG
CGGCCGAACTGCGGCTGCCTGCCGGCCTGACCGGGCTCATTGCGATGCTGCCGCAACTCGGCTATGCGGCGGGCCTCGTG
CTGCTCGTGCCGCTCATCGACCTGCTCGAGAACCGCCGGCTCATCGTGACGACGCTCACCGTCTGCGCGGCGACGCTCGC
GCTGCCTGCCGTCACGCACTCCGGCGCCCTGTACCTCGCTGCGGTGTTCGCCGCGGGCGCGGCATCGAGCGTGATCCAGA
TGCTCGTGCCGATGGCGGCGTCGATGGCGCCGGACGAACAGCGCGGCCGCGCGGTCGGCAACGTGATGAGCGGCCTGATG
CTCGGCATCCTGCTGTCGCGGCCGCTCGCGAGCCTGATCGCCGGCACGGCCGGCTGGCGCGCGTTCTACGGCACGGCCGC
CGCCGCCGACATCGCGATCGCCGCGGTGCTGGCCGCGAAGCTGCCGTTGCGCGCGCCGTCGCTGTCGACTCGTTATGCGG
CGCTGCTCCGGTCGCTCTGGGTGCTCGTCGCGACCGAGCGCGTGCTGCAGCGGCGCGCGCTGTCCGCGGCGCTATCGATG
GGCGCATTCAGCGCGTTCTGGACCGCGATCGGTCTGCGCCTCGCCGCCGCGCCATTCGATCTCGGCTTGCATGGAATCGC
GATGTTCGCGTTCGCCGGCGCGACGGGCGCGATCGTCACGCCGTTCGCGGGGCTGGCCGGCGACCGCGGCTGGGAGCGCC
GCGCATTGCGCGGCGCGCACGTGGCCATGCTCGCCGCGCTGGTCGCGCTCGGCGTCGCAGGCGCGGGCTGGGCCCGGTTC
GATCCGGCCGCGCATCCGACGCTGGCGCTCACGCTGCTCGTCGCCGGCGCGGCGGCGCTCGATGCGGGCGTCGTCGCCGA
CCAGACGCTCGGCCGGCGCGCGATCAACCTGCTGAACCCCGCCGCGCGCGGACGGCTCAACGGGCTGTTCGTCGGGCTGT
TCTTCGTCGGCGGCTCGCTCGGCGCCGCGCTCGCCGGCGCGGCGTGGGCATGGGCCGGCTGGAGCGCGGTGTGCGCGGTG
GGTCTCGCGTTCGCGGGGGCCGCATTCGCGCTCGACTGGATCGGCGCGCGCCGGCAAGCCGTGCGCTGA

Upstream 100 bases:

>100_bases
ATTCAAAACAAACTCGCATAATCATATTAAAGATATTTCAATTGTCGCATAACAAGCGCGTCTCTACGATGAAGGCTCAT
TCGTTTCCGAGACCCTTCCG

Downstream 100 bases:

>100_bases
AACGACGACGCCCCACGTCGTCACCGACGCGGGGCGTTTCGTTCCTTCACGCGGCGTGCGGCCGCCGGCGCACCACGCCT
CGTCGGCTGATGCGCCCGCT

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MNCPADLRAGPAAGEPRAAPAPTLTPALTVFFSATVGVIVLDLFAAQPLTGPIAAELRLPAGLTGLIAMLPQLGYAAGLV
LLVPLIDLLENRRLIVTTLTVCAATLALPAVTHSGALYLAAVFAAGAASSVIQMLVPMAASMAPDEQRGRAVGNVMSGLM
LGILLSRPLASLIAGTAGWRAFYGTAAAADIAIAAVLAAKLPLRAPSLSTRYAALLRSLWVLVATERVLQRRALSAALSM
GAFSAFWTAIGLRLAAAPFDLGLHGIAMFAFAGATGAIVTPFAGLAGDRGWERRALRGAHVAMLAALVALGVAGAGWARF
DPAAHPTLALTLLVAGAAALDAGVVADQTLGRRAINLLNPAARGRLNGLFVGLFFVGGSLGAALAGAAWAWAGWSAVCAV
GLAFAGAAFALDWIGARRQAVR

Sequences:

>Translated_422_residues
MNCPADLRAGPAAGEPRAAPAPTLTPALTVFFSATVGVIVLDLFAAQPLTGPIAAELRLPAGLTGLIAMLPQLGYAAGLV
LLVPLIDLLENRRLIVTTLTVCAATLALPAVTHSGALYLAAVFAAGAASSVIQMLVPMAASMAPDEQRGRAVGNVMSGLM
LGILLSRPLASLIAGTAGWRAFYGTAAAADIAIAAVLAAKLPLRAPSLSTRYAALLRSLWVLVATERVLQRRALSAALSM
GAFSAFWTAIGLRLAAAPFDLGLHGIAMFAFAGATGAIVTPFAGLAGDRGWERRALRGAHVAMLAALVALGVAGAGWARF
DPAAHPTLALTLLVAGAAALDAGVVADQTLGRRAINLLNPAARGRLNGLFVGLFFVGGSLGAALAGAAWAWAGWSAVCAV
GLAFAGAAFALDWIGARRQAVR
>Mature_422_residues
MNCPADLRAGPAAGEPRAAPAPTLTPALTVFFSATVGVIVLDLFAAQPLTGPIAAELRLPAGLTGLIAMLPQLGYAAGLV
LLVPLIDLLENRRLIVTTLTVCAATLALPAVTHSGALYLAAVFAAGAASSVIQMLVPMAASMAPDEQRGRAVGNVMSGLM
LGILLSRPLASLIAGTAGWRAFYGTAAAADIAIAAVLAAKLPLRAPSLSTRYAALLRSLWVLVATERVLQRRALSAALSM
GAFSAFWTAIGLRLAAAPFDLGLHGIAMFAFAGATGAIVTPFAGLAGDRGWERRALRGAHVAMLAALVALGVAGAGWARF
DPAAHPTLALTLLVAGAAALDAGVVADQTLGRRAINLLNPAARGRLNGLFVGLFFVGGSLGAALAGAAWAWAGWSAVCAV
GLAFAGAAFALDWIGARRQAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42696; Mature: 42696

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CC
>Mature Secondary Structure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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]