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The map label for this gene is fliN [H]

Identifier: 83721171

GI number: 83721171

Start: 29566

End: 29997

Strand: Direct

Name: fliN [H]

Synonym: BTH_I0028

Alternate gene names: 83721171

Gene position: 29566-29997 (Clockwise)

Preceding gene: 83720285

Following gene: 83718483

Centisome position: 0.78

GC content: 69.44

Gene sequence:

>432_bases
ATGAGCGCCGCCGCGGCCGACGGCGCGGCACCCGCCGCGCCGCAGGAGGAGATGGCGATGGACGACTGGGCGGCCGCGCT
CGCCGAGCAGAACCAGCAGCCGATCGAGACGGGCGCGACGGGCGCCGGCGTGTTCCGGCCGCTGTCGAAGGCCGCGGCGA
GCTCGACGCACAACGACATCGACATGATCCTCGACATCCCGGTCAAGATGACGGTCGAGCTCGGCCGCACGAAGATCGCG
ATTCGCAACCTGCTGCAGCTCGCGCAGGGCTCGGTGGTCGAGCTCGACGGGCTCGCCGGCGAGCCGATGGACGTGCTCGT
CAACGGCTGCCTGATCGCGCAGGGCGAGGTGGTCGTCGTCAACGACAAGTTCGGCATCCGGCTCACCGACATCATCACGC
CGTCCGAACGCATCCGGAAGCTGAACCGATGA

Upstream 100 bases:

>100_bases
ATCAGCGCAAGCGACACGATGAAGGAAGGTGGATATGACTGAGTTGAACGCGACCCCCGAGGCCGACGGCATCGATGAAC
AGGCGTTTGCGGACGCCGCG

Downstream 100 bases:

>100_bases
CACCGCGCATCGCGCCGTCCGTCTCGCCGTCCGTTTCATTGCGCCGGTCGGCCGCGCGCGCGCTCGCGGCGGCGCCGCGC
CGCATGCGTCGCGCGCCCGC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSAAAADGAAPAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAASSTHNDIDMILDIPVKMTVELGRTKIA
IRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Sequences:

>Translated_143_residues
MSAAAADGAAPAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAASSTHNDIDMILDIPVKMTVELGRTKIA
IRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR
>Mature_142_residues
SAAAADGAAPAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAASSTHNDIDMILDIPVKMTVELGRTKIAI
RNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=126, Percent_Identity=61.9047619047619, Blast_Score=155, Evalue=7e-40,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15062; Mature: 14931

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAAADGAAPAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAASSTHNDI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE
DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV
EEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCEEECCCCEEEE
NDKFGIRLTDIITPSERIRKLNR
ECCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
SAAAADGAAPAAPQEEMAMDDWAAALAEQNQQPIETGATGAGVFRPLSKAAASSTHNDI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE
DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV
EEEEECCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCEEECCCCEEEE
NDKFGIRLTDIITPSERIRKLNR
ECCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]