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The map label for this gene is yfiA [C]

Identifier: 83721047

GI number: 83721047

Start: 537733

End: 538092

Strand: Reverse

Name: yfiA [C]

Synonym: BTH_I0485

Alternate gene names: 83721047

Gene position: 538092-537733 (Counterclockwise)

Preceding gene: 83718503

Following gene: 83721433

Centisome position: 14.13

GC content: 56.11

Gene sequence:

>360_bases
ATGAACCTGAAGATCAGTGGACACCATCTCGAAGTCACGCCTGCTATCCGCGAATACGTGATCACCAAGCTCGACAGGGT
GCTACGCCATAGCGATCAGGTCATCGATGGCGCTGTGATCCTCACGGTCGACAATCACAAAGAGAAGGACAAGCGGCAAA
AGGCGGAAATCACGCTGCATCTGAAGGGTAAGGATATCTTCGTCGAAAGCGCGAACGGCGATTTGTACGCGGCGATCGAC
CTGCTGATCGACAAGCTCGACCGCCAGGTGGTCAAGCACATGGAGCGTCTGCAGACGCACGCGCACGAGCCGATCAAGCA
TCAGCAGACCGCCGAACAGATCGAACTTCCGCCGCAATGA

Upstream 100 bases:

>100_bases
AAGCCGGCCGACCGATGCCCGCTCACCGCGAGCATCGGCAACGAAATCGGCAGGCATGCCGCCTCTATGCGGAAGGTGGT
CATTAGCTTGGAGAAGCACT

Downstream 100 bases:

>100_bases
TCGCGGCGCGACAGCGCCAGCCGAACCGCCCGCCTCGACGGGCGGTTTTTTATTGTGCAAATCGCCTCGGCGCGACGCGG
ATGCGCCGCGCGCCGCGCGA

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: ORF130 [H]

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKDKRQKAEITLHLKGKDIFVESANGDLYAAID
LLIDKLDRQVVKHMERLQTHAHEPIKHQQTAEQIELPPQ

Sequences:

>Translated_119_residues
MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKDKRQKAEITLHLKGKDIFVESANGDLYAAID
LLIDKLDRQVVKHMERLQTHAHEPIKHQQTAEQIELPPQ
>Mature_119_residues
MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKDKRQKAEITLHLKGKDIFVESANGDLYAAID
LLIDKLDRQVVKHMERLQTHAHEPIKHQQTAEQIELPPQ

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=37, Blast_Score=69, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13677; Mature: 13677

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKDKRQKAEITLH
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEECCEEEEEECCCCCHHHHCCEEEEEE
LKGKDIFVESANGDLYAAIDLLIDKLDRQVVKHMERLQTHAHEPIKHQQTAEQIELPPQ
ECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNLKISGHHLEVTPAIREYVITKLDRVLRHSDQVIDGAVILTVDNHKEKDKRQKAEITLH
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEECCEEEEEECCCCCHHHHCCEEEEEE
LKGKDIFVESANGDLYAAIDLLIDKLDRQVVKHMERLQTHAHEPIKHQQTAEQIELPPQ
ECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1417413 [H]