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The map label for this gene is kdsD [H]

Identifier: 83720870

GI number: 83720870

Start: 542536

End: 543519

Strand: Reverse

Name: kdsD [H]

Synonym: BTH_I0491

Alternate gene names: 83720870

Gene position: 543519-542536 (Counterclockwise)

Preceding gene: 83718800

Following gene: 83719006

Centisome position: 14.27

GC content: 69.72

Gene sequence:

>984_bases
ATGATAGCGAAAATCAATGATGATCGGGCGCTCGCGCTCGCCCGCGACGTGCTCGACATCGAGGCGAGTGCCGTGCGCGC
GCTCGCCGACCAGCTCGACGGCGAGTTCGTCGCCGCGGTCGGGCTGCTCTTGGAGTGCCGCGGACGCGTCGTCGTGTCCG
GCATCGGCAAATCGGGGCACATCGCCCGCAAGATCGCCGCGACGCTCGCCAGCACCGGCACCCCCGCGTTTTTCGTTCAT
CCGGCCGAAGCCAGCCACGGCGACCTCGGCATGGTCACGAAGGACGACGTGTTCGTCGCGATCTCGAACTCCGGCGAATC
GGAAGAGCTCGTCGCGATCCTGCCGCTCATCAAGCGGCTCGGCGCGAAGCTGATCGCGATGACGGGCCGCCCGGCGTCGA
GCCTCGCGACGCTGTCCGACGTCCATCTGAACGCGGGCGTCGCGAAGGAAGCCTGCCCGCTGAACCTCGCGCCGACGGCG
AGCACGACGGCCGCGCTCGCGCTCGGCGACGCGCTCGCCGTCGCGGTGCTCGACGCGCGCGGCTTCGGCTCCGACGATTT
CGCGCGCTCGCACCCCGGCGGCGCGCTCGGCCGGCGCCTGCTCACGTACGTGCGCGACGTGATGCGCACGGGCGACGAAG
TGCCCGCCGTGCCGCTCGGCGCGACGCTCTCCGACGCCCTCTTCCAGATCACAGCGAAGCGCATGGGCATGACGGCCGTC
GTCGACGACGCGGGCCGCGTGGCCGGCATCTTCACCGACGGCGACCTGCGCCGCGTGCTCGAGCGCGACGGCGATTTCCG
CCGGCTGCCGATCGTCGACGTGATGACGCGCAATCCGCGCACGATCGCGCCGGATCATCTCGCCGTCGAGGCGGTGGAAC
TGATGGAGCGCCACCGGATCAACCAGATGCTCGTCGTCGACGAGCATGGCGCGCTGATCGGCGCGCTCAACATGCACGAT
CTGTTCTCGAAGAAGGTGATTTGA

Upstream 100 bases:

>100_bases
CGCCGCAATGACGGACGCCGGGTTGGGCCGGGAGACTACTCGGAAAATTGGGCGCAAGGGGCCCGGCGCGGCGAACAAAC
GCCTTTGCTATACTCCGCGC

Downstream 100 bases:

>100_bases
TGTCCGCGTCCCCTGTCACGGCGGCCGAGCGCGCGAGCCGCGTAAAGCTGATGATTTTCGACGTCGACGGCGTGCTGACC
GACGGCGGCCTCCATTTCAC

Product: carbohydrate isomerase KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIAKINDDRALALARDVLDIEASAVRALADQLDGEFVAAVGLLLECRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLGATLSDALFQITAKRMGMTAV
VDDAGRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRNPRTIAPDHLAVEAVELMERHRINQMLVVDEHGALIGALNMHD
LFSKKVI

Sequences:

>Translated_327_residues
MIAKINDDRALALARDVLDIEASAVRALADQLDGEFVAAVGLLLECRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLGATLSDALFQITAKRMGMTAV
VDDAGRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRNPRTIAPDHLAVEAVELMERHRINQMLVVDEHGALIGALNMHD
LFSKKVI
>Mature_327_residues
MIAKINDDRALALARDVLDIEASAVRALADQLDGEFVAAVGLLLECRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRLGAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLGATLSDALFQITAKRMGMTAV
VDDAGRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRNPRTIAPDHLAVEAVELMERHRINQMLVVDEHGALIGALNMHD
LFSKKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=314, Percent_Identity=56.3694267515924, Blast_Score=343, Evalue=7e-96,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=48.2428115015974, Blast_Score=287, Evalue=5e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34458; Mature: 34458

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKINDDRALALARDVLDIEASAVRALADQLDGEFVAAVGLLLECRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLGATLSDALFQITAKRMGMTAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
VDDAGRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRNPRTIAPDHLAVEAVELMERHRI
ECCCCCEEEEEECHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDEHGALIGALNMHDLFSKKVI
CEEEEEECCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure
MIAKINDDRALALARDVLDIEASAVRALADQLDGEFVAAVGLLLECRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTKDDVFVAISNSGESEELVAILPLIKRL
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHC
GAKLIAMTGRPASSLATLSDVHLNAGVAKEACPLNLAPTASTTAALALGDALAVAVLDAR
CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSDDFARSHPGGALGRRLLTYVRDVMRTGDEVPAVPLGATLSDALFQITAKRMGMTAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
VDDAGRVAGIFTDGDLRRVLERDGDFRRLPIVDVMTRNPRTIAPDHLAVEAVELMERHRI
ECCCCCEEEEEECHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDEHGALIGALNMHDLFSKKVI
CEEEEEECCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]