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The map label for this gene is ihfA [H]

Identifier: 83720646

GI number: 83720646

Start: 2951434

End: 2951838

Strand: Reverse

Name: ihfA [H]

Synonym: BTH_I2589

Alternate gene names: 83720646

Gene position: 2951838-2951434 (Counterclockwise)

Preceding gene: 83718629

Following gene: 83720328

Centisome position: 77.49

GC content: 63.46

Gene sequence:

>405_bases
ATGAACGACATGAACTCGAGTGAATTTGAAGCCCTTCTGACGGCGCAGCGCAGCGCCATGTCACGCGACGTTCCGGCCTC
GCCGCTCCCCGGCGATACGCCGACGCTGACGAAGGCCGAGCTGGCCGAACTGCTGTTCGACAGCGTCGGCCTCAACAAGC
GCGAGGCGAAGGACATGGTCGAGGCGTTTTTCGAGGTGATTCGCGATGCCCTCGAAAATGGCGAGAGCGTGAAGCTGTCG
GGCTTCGGCAATTTCCAGCTGCGCGACAAGCCGCAGCGGCCGGGGCGCAATCCGAAGACGGGCGAGGCGATTCCGATTGC
CGCACGCCGTGTCGTGACGTTCCATGCGAGCCAGAAGCTGAAGGCGCTCGTCGAAAACGGCGCCGAGCCGGATCTCGTGC
GTTAA

Upstream 100 bases:

>100_bases
AGTCTATGGCGCGCGTTTGCGCGGATAGGGCGCAAAAGCGGCGGAAGTCGCCGCTTTTGTCAGTGTTTTTGTCCAAGTTT
GACGCGCTAGTTTTGCACAT

Downstream 100 bases:

>100_bases
GCCGGCGCTTTGCCTCCTGCGCGCTGCGCCCGCGCCCCTTACCGACGGTTAACTGACGATGACGTCGACGGTTGAGAAAG
TCGTGTTGCCCCCGATTCCC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNDMNSSEFEALLTAQRSAMSRDVPASPLPGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLVR

Sequences:

>Translated_134_residues
MNDMNSSEFEALLTAQRSAMSRDVPASPLPGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLVR
>Mature_134_residues
MNDMNSSEFEALLTAQRSAMSRDVPASPLPGDTPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLS
GFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPDLVR

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=72.9166666666667, Blast_Score=141, Evalue=1e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 14682; Mature: 14682

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMNSSEFEALLTAQRSAMSRDVPASPLPGDTPTLTKAELAELLFDSVGLNKREAKDMV
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KALVENGAEPDLVR
HHHHHCCCCCCCCC
>Mature Secondary Structure
MNDMNSSEFEALLTAQRSAMSRDVPASPLPGDTPTLTKAELAELLFDSVGLNKREAKDMV
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KALVENGAEPDLVR
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA