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The map label for this gene is ygcF [H]

Identifier: 83720295

GI number: 83720295

Start: 168026

End: 168658

Strand: Direct

Name: ygcF [H]

Synonym: BTH_I0138

Alternate gene names: 83720295

Gene position: 168026-168658 (Clockwise)

Preceding gene: 83719597

Following gene: 83721427

Centisome position: 4.41

GC content: 64.77

Gene sequence:

>633_bases
ATGACGTACACGGTCAAGGAAATCTTCTACACGTTGCAGGGCGAGGGCGCGAACGCCGGTCGTCCGGCCGTGTTCTGCCG
GTTCGCCGGCTGCAACCTGTGGACAGGGCGCGAAGCGGATCGCGGCGACGCGGTATGCCGCTTTTGCGACACCGACTTCG
TCGGCACCGACGGCGAGAACGGCGGCAAGTTCAAGGATGCCGCATCGCTCGCGGCGAAGATCGCGTCGCTCTGGCCGCCA
GGCGAGGCGCATCGCTTCGTCGTCTGCACGGGCGGCGAGCCGATGCTGCAGCTCGATCAGCCGCTCGTCGACGCGCTGCA
CGCGGCGGGCTTCACGATCGCGATCGAGACAAACGGCTCGCTGCCCGTGCTCGAATCGATCGACTGGATTTGCGTGAGCC
CGAAGGCGGATGCGCCGCTCGTCGTCACGAAGGGCAACGAACTGAAGGTGGTGGTGCCGCAGGACAACCAGCGCCTTGCC
GATTACGCGAAGCTCGACTTCGAGCATTTCCTCGTGCAGCCGATGGACGGCCCGTCGCGTGAGCTCAATACGAAGCTCGC
GATCGACTGGTGCAAGCGCCATCCGCAGTGGCGGCTGTCGATGCAGACGCACAAGTACCTGAACATTCCTTGA

Upstream 100 bases:

>100_bases
TGATGCGCGTGGCGCGGCGTGGCGCTCGCGCGTGGGCGCGAGCGGCAACAGGATTCATCGAGTAACGGAAGGCGAGCGGC
GCAAGCCGGAACGAAGCAGC

Downstream 100 bases:

>100_bases
GCCTTACGCTTCATTCATCGTGCTGATTACCCGAAAACTCGAATTCGACGCGGGGCACCGCATCCCCGATCACCGCAGCC
AGTGCCGGAATCTGCACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGENGGKFKDAASLAAKIASLWPP
GEAHRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEHFLVQPMDGPSRELNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Sequences:

>Translated_210_residues
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGENGGKFKDAASLAAKIASLWPP
GEAHRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLA
DYAKLDFEHFLVQPMDGPSRELNTKLAIDWCKRHPQWRLSMQTHKYLNIP
>Mature_209_residues
TYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGENGGKFKDAASLAAKIASLWPPG
EAHRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGSLPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLAD
YAKLDFEHFLVQPMDGPSRELNTKLAIDWCKRHPQWRLSMQTHKYLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=240, Percent_Identity=33.75, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23153; Mature: 23021

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGEN
CEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCEEEEEECCCCCCCCCCC
GGKFKDAASLAAKIASLWPPGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGS
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHCHHHEEEECCCCCCC
ELNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
TYTVKEIFYTLQGEGANAGRPAVFCRFAGCNLWTGREADRGDAVCRFCDTDFVGTDGEN
EEEEEEEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCEEEEEECCCCCCCCCCC
GGKFKDAASLAAKIASLWPPGEAHRFVVCTGGEPMLQLDQPLVDALHAAGFTIAIETNGS
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHCCEEEEEECCCC
LPVLESIDWICVSPKADAPLVVTKGNELKVVVPQDNQRLADYAKLDFEHFLVQPMDGPSR
CCHHHCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHCHHHEEEECCCCCCC
ELNTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]