Click here to switch to the map view.

The map label for this gene is yizB [H]

Identifier: 83720084

GI number: 83720084

Start: 59895

End: 60236

Strand: Direct

Name: yizB [H]

Synonym: BTH_I0055

Alternate gene names: 83720084

Gene position: 59895-60236 (Clockwise)

Preceding gene: 83719725

Following gene: 83720668

Centisome position: 1.57

GC content: 64.91

Gene sequence:

>342_bases
ATGAAGACCCAGTTGAAGAAAGGCGCGCTCGACATGTGCGTGCTCGCCGTGCTGGCGCGGCGGGACAGCTACGCGTACGA
GCTCGTGTCGACGCTTGCCGAAACGATGGAAATCAGCGAAGGCACGATCTATCCGCTGATGCGGCGCCTGCAGGCGGAGG
CCTGGGTGACGACCTACCTCGTCGAGTCGACGTCGGGGCCGCCGCGCAAGTACTACTCGATCACCGACGCCGGGCGCGCG
AGCCTGCGGCAGATGGAAAACGAGTGGCGGAGTTTCGTCGACGAAGTCAACGGCGTGCTGGCGCTGCACCGCACGCAAGC
GGACGGAGAGGAACGGCAATGA

Upstream 100 bases:

>100_bases
CTGTTGCTATAGTCCGCCCATGTTCGCGGCGGGCCGCACGACGGGCCGCGGCAGAACATGACACGGTATCTTGCAACGCA
CACTACGCCGGCGGAACGGA

Downstream 100 bases:

>100_bases
AGCAGGACGCATTCATCCAGCGGTTGCGGCAGGCGCTCGGCAGCCTGCCGAAGCGGGACGTCGACGAGATCGTCGCCGAC
TACCGCGAGTACATCGGCGA

Product: PadR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKTQLKKGALDMCVLAVLARRDSYAYELVSTLAETMEISEGTIYPLMRRLQAEAWVTTYLVESTSGPPRKYYSITDAGRA
SLRQMENEWRSFVDEVNGVLALHRTQADGEERQ

Sequences:

>Translated_113_residues
MKTQLKKGALDMCVLAVLARRDSYAYELVSTLAETMEISEGTIYPLMRRLQAEAWVTTYLVESTSGPPRKYYSITDAGRA
SLRQMENEWRSFVDEVNGVLALHRTQADGEERQ
>Mature_113_residues
MKTQLKKGALDMCVLAVLARRDSYAYELVSTLAETMEISEGTIYPLMRRLQAEAWVTTYLVESTSGPPRKYYSITDAGRA
SLRQMENEWRSFVDEVNGVLALHRTQADGEERQ

Specific function: Unknown

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR [H]

EC number: NA

Molecular weight: Translated: 12865; Mature: 12865

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQLKKGALDMCVLAVLARRDSYAYELVSTLAETMEISEGTIYPLMRRLQAEAWVTTYL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
VESTSGPPRKYYSITDAGRASLRQMENEWRSFVDEVNGVLALHRTQADGEERQ
HHCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKTQLKKGALDMCVLAVLARRDSYAYELVSTLAETMEISEGTIYPLMRRLQAEAWVTTYL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
VESTSGPPRKYYSITDAGRASLRQMENEWRSFVDEVNGVLALHRTQADGEERQ
HHCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]