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The map label for this gene is ybaK [H]

Identifier: 83720025

GI number: 83720025

Start: 838044

End: 838535

Strand: Direct

Name: ybaK [H]

Synonym: BTH_I0728

Alternate gene names: 83720025

Gene position: 838044-838535 (Clockwise)

Preceding gene: 83720485

Following gene: 83719932

Centisome position: 22.0

GC content: 65.85

Gene sequence:

>492_bases
ATGAGCAAATCCAAACACGTTTCCGAAACGCCCGCGACCCAGTTCCTGCGCCGCCACGGCGTCGCGTTCGGCGAGCACGT
CTACGAATACGTCGACCACGGCGGCACGTCCGAATCGGCGCGGCAGTTGGGTGTCGACGAGCACGCGGTCGTCAAGACGC
TCGTGATGGAAGACGAGCACGCGAAGCCGCTCATCATCCTGATGCACGGCGACCGCACGGTGTCGACGAAGAACCTCGCG
CGGCAGATCGGCGCGAAGCGAGTCGAGCCGTGCAAGCCGGAGGTCGCGAACCGGCATTCGGGCTACCTCGTCGGCGGCAC
GTCGCCGTTCGGCACGAAGAAGGCGATGCCCGTCTATGTCGAATCGACGATCCTCGATCTGCCGTCGATCTACCTGAACG
GCGGCCGGCGCGGCTATCTGGTGAGCCTTGCCCCCGCCGTTCTGACGACGTTGCTGAGCGCGCGGCCCGTGCAGTGCGCG
AGCGTTGACTGA

Upstream 100 bases:

>100_bases
TCGCCTATCGTGTGGCGACGATCGTGCCACGCGGGCGCCGCGCGGACAATCTGCCATTCGGACAATAGTCCCGCGCGCCG
CGTGCAATTAAAATGCGCGC

Downstream 100 bases:

>100_bases
GGGTTTCACCCGCATGGCGCGCCGCGCCGCTTCGGTAGAATGAGCGCCGCCGCGGCTTCGCGATCGAGGCCATCCATCCA
ACCCATACGTTGAAACAAGA

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVDHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLTTLLSARPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVDHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLTTLLSARPVQCA
SVD
>Mature_162_residues
SKSKHVSETPATQFLRRHGVAFGEHVYEYVDHGGTSESARQLGVDEHAVVKTLVMEDEHAKPLIILMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYVESTILDLPSIYLNGGRRGYLVSLAPAVLTTLLSARPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=161, Percent_Identity=34.1614906832298, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17708; Mature: 17576

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSKHVSETPATQFLRRHGVAFGEHVYEYVDHGGTSESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILDLPSIYLNGGRRGYLVSLAPAVLTTLLSARPVQCASVD
HHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCEECCCC
>Mature Secondary Structure 
SKSKHVSETPATQFLRRHGVAFGEHVYEYVDHGGTSESARQLGVDEHAVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCC
AKPLIILMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTKKAMPVYV
CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
ESTILDLPSIYLNGGRRGYLVSLAPAVLTTLLSARPVQCASVD
HHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]