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The map label for this gene is ybcM [C]

Identifier: 83719900

GI number: 83719900

Start: 3198704

End: 3199900

Strand: Reverse

Name: ybcM [C]

Synonym: BTH_I2784

Alternate gene names: 83719900

Gene position: 3199900-3198704 (Counterclockwise)

Preceding gene: 83721301

Following gene: 83721358

Centisome position: 84.0

GC content: 67.92

Gene sequence:

>1197_bases
GTGTCGCCGGCGCCGCGGGCGTGCGCGGGCCGCCGATGTCACGGCGGATCATCTGGCCTTCCGGTCGCGGCAAGCCGGCG
GCGATCGCCCATGATCCGGCGTGCGGGAAAGATCGCATTGAGCATTACATTGAGCAATGGCATATTGGGCGTGCTCCGAA
CATTTGAGGCCATCTTGATCGCCAAGCTCGCCCATTGGGATTTCGCCCGGCCCGTCGGCACGACGCGCGTGCTCGTCGAA
GTCGGCGTCGAGCAGGGGTTGACCGTCGACCGATGCCTCGACGGCAGCGGCGTTGCCCCTGAACGGCTCGACGAGCCGGA
CGCCACCGTCGCCGCAGCGCAGGAACTGCGCATCATCCGCAACCTGATGCGGCTGCTGGGGCCGGCGTTTCCGCTCGGCA
TCGAAGTCGGCCGCCGCTACCACGCGACGACTTACGGAATCTGGGGATTCGCGCTCATGAGCAGCGCGACGTTCGGCGAT
GCCGTGTCGGTCGGATTGCGCTACCTTCAACTGACGTCGACCTTCTGCGACATCCGGCCGACCGTGCGCGGCGAGGACGC
GACGCTCGTGATCGACGATCGCGACCTGCCCGGCGACGTGCGCGACGTGCTGGTCGAAATCACGGTGGCCGCGTTGATCA
CGCTGCAGTTCGATCTCGATTCTGCGAACTTGCCGGTCAAGCGTCTTGCGCTCAAGATGAAGCCGCCGGCGTACGCCGGC
CGCTTTCGGACGCTGTTCGATGCGTCGCCCGAATTCGGCGCGGCGCACAATGCGCTGACGGTCGACGCGCATTGTTTGGC
TCTGAAGTTGCCGCAGCGCAACGCGCTGACGCGGCGGCAATGCGAGGACGAGTGCCGCCGCGTGCTCGAGCGCCGCCGTC
GCAGCGAAGGCTGGGCGGGGCGTGTGCGCCGGCATCTCGCCGGCGATCCGGCGCGCGGCCCGACGATGGACGTGCTCGCG
GCCGAGTTGGGCGTGAGCGTGCGCACGTTGCGGCGGCGGCTTGCGGATGAGGGGACGGATTACGAGACGGTCGTCGACGA
GATTCGCGAGGCGCTGGCCGAAGCGCTGCTTGCGACCACGACGCTGACCGTCGCGGAAGTGTCGGAGCGCCTCGGTTATT
CGGAACCTTCCGCGTTCGCGCGCGCGTTCAGGCGCTGGAAGGCGATGTCGCCGAATGAATACCGGCGGTCCGCGTGA

Upstream 100 bases:

>100_bases
TTCGGCTGCGGGGCGAGGGTGGTGCTCATGTCGTCTCCTGGCTATCGTGTTCGTCGCGTGGGGCGTGCCGGTAAAGCATC
GGGCGCGCGGGCGGCGCGAC

Downstream 100 bases:

>100_bases
CGCCGGGCGTGCGGGCGCGAAAGCGATGCGCGCGGTTCTCGGCGGGCGGATGTGCGGGCGGCGCCCCGGCCCGGCGCGAG
TCCGCGCGAAATGCGCCGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSPAPRACAGRRCHGGSSGLPVAASRRRSPMIRRAGKIALSITLSNGILGVLRTFEAILIAKLAHWDFARPVGTTRVLVE
VGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPAFPLGIEVGRRYHATTYGIWGFALMSSATFGD
AVSVGLRYLQLTSTFCDIRPTVRGEDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPAYAG
RFRTLFDASPEFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVRRHLAGDPARGPTMDVLA
AELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA

Sequences:

>Translated_398_residues
MSPAPRACAGRRCHGGSSGLPVAASRRRSPMIRRAGKIALSITLSNGILGVLRTFEAILIAKLAHWDFARPVGTTRVLVE
VGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPAFPLGIEVGRRYHATTYGIWGFALMSSATFGD
AVSVGLRYLQLTSTFCDIRPTVRGEDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPAYAG
RFRTLFDASPEFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVRRHLAGDPARGPTMDVLA
AELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA
>Mature_397_residues
SPAPRACAGRRCHGGSSGLPVAASRRRSPMIRRAGKIALSITLSNGILGVLRTFEAILIAKLAHWDFARPVGTTRVLVEV
GVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIRNLMRLLGPAFPLGIEVGRRYHATTYGIWGFALMSSATFGDA
VSVGLRYLQLTSTFCDIRPTVRGEDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPAYAGR
FRTLFDASPEFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAGRVRRHLAGDPARGPTMDVLAA
ELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 43654; Mature: 43523

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAPRACAGRRCHGGSSGLPVAASRRRSPMIRRAGKIALSITLSNGILGVLRTFEAILI
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEEEECCCHHHHHHHHHHHHH
AKLAHWDFARPVGTTRVLVEVGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIR
HHHHHHHCCCCCCCHHHHEEECHHHCCCHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHH
NLMRLLGPAFPLGIEVGRRYHATTYGIWGFALMSSATFGDAVSVGLRYLQLTSTFCDIRP
HHHHHHCCCCCCHHHHCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
TVRGEDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPAYAG
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHEECCCCCHHH
RFRTLFDASPEFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAG
HHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
RVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATT
HHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure 
SPAPRACAGRRCHGGSSGLPVAASRRRSPMIRRAGKIALSITLSNGILGVLRTFEAILI
CCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEEEECCCHHHHHHHHHHHHH
AKLAHWDFARPVGTTRVLVEVGVEQGLTVDRCLDGSGVAPERLDEPDATVAAAQELRIIR
HHHHHHHCCCCCCCHHHHEEECHHHCCCHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHH
NLMRLLGPAFPLGIEVGRRYHATTYGIWGFALMSSATFGDAVSVGLRYLQLTSTFCDIRP
HHHHHHCCCCCCHHHHCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
TVRGEDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPAYAG
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHEECCCCCHHH
RFRTLFDASPEFGAAHNALTVDAHCLALKLPQRNALTRRQCEDECRRVLERRRRSEGWAG
HHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
RVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATT
HHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]