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The map label for this gene is yciR [C]

Identifier: 83719449

GI number: 83719449

Start: 1072452

End: 1074812

Strand: Reverse

Name: yciR [C]

Synonym: BTH_I0948

Alternate gene names: 83719449

Gene position: 1074812-1072452 (Counterclockwise)

Preceding gene: 83718740

Following gene: 83720886

Centisome position: 28.22

GC content: 66.71

Gene sequence:

>2361_bases
ATGAGTTCGTCTCGGTCACACGCCGCCCGCGCCGCGCGGCCGGTGCGCGCGACACGCAAGTCGCGCCGCCGGCGCGCGCT
GTTCGCGATCCCGCTCCTCGGCACGCTGGCGCTCGCGCTGCTGTGGGTGGCCATCATCGCGCGCCTGTCCGTCGAGAAGG
AAAGCGCGTTCCGCGACGCGGGCGCGTCGGCCGCGATCCTGTCGACGGCGCTCGAGCAGCACACGGTCAAGGCGATCCAT
CAGGTCGACCAGATCACCCGCTTCGTCAAATACGAATTCGAGAAGTCGCCCGCCCGCTTCAATCTCGCGCGCACGGTCGA
GAAAGGCGTCGTGCCGAGCGACACGCTGATCCAGGTGTCCATTCTCGATGCGCGCGGCCGGCTGATCGCGAACACCGCCG
AGTTGCATCCGAAGCCGATCGACCTGTCCGACCGCGAGCACTTCAGGGTGCACATGCAGCGCAACGACGACGATCTCTAC
ATCAGCAAGCCGGTGTTCGGCCGCGTGTCGCGCCACTGGACGCTGCAGATGACGCGGCGCCTGAACCATCCGGACGGCTC
GTTCGCCGGCGTCGTCGTCGTGTCCGAGGACCCGACCTACTTCACGAACGACTTCTACAACAACGCGACGCTCGGCAAGG
ACGGCGTGATCGCCGTGATCTCGGATACCGGCGCCGTGCTCGCGCGCAGCACGGGCTCCACGCAGAAGTCGCCCGGCACG
TTCTCGGCGTCGGGCGTCTATCCAGTGTCGGAGCGCGCGTCGGGCATCTATGTCGATCCGATCGACGGCATCAGGCGCAT
CGTGTCGTATCGCCATCTCGACGGCTATCCGCTCGGCGTGATGGTCGGCCTGTCGCAGGCGGAAGAATTCGCCGACTATC
ACCACACGCGCAACGTCTACCTGCTGATGACGAGCTTCATCACGCTCGCGATGCTCGCGTTCTTCGGCGTCGCGACGGGC
CTGATCGGCAAGCTGCTCGGCCGCGAGCGCGAAATGACGCAGCTCGCCGAGTTCGATCTGCTCACGGGGCTCGCGAACCG
CTACGCGACGCTGCGCAGCCTGCGCAACGACGTCGCGCTGCCGTCGAACCTGTCGCGCCTCGCGATCCTGTTCATCGATC
TCGACAATTTCAAGACCGTCAACGACACGCTCGGCCACAACGCGGGCGACATCGTGCTGCAGATGACGGCCGCGCGCCTG
TCCGACGCGGTGACGAACGAAGGCGCGCTCGCGCGCATCGGCGGCGACGAGTTCGTCGTCGTCGTGAAGGGCGAGAACGT
CGAGCGGCGCGCCGAGCGCCTCGCCGAGGCGATCGTGCGGATGTTCGCCGAGCCGTTCGACGTGCGCGGCAGCTCGTTCG
TGCTGCACGCGAGCATCGGCATCGCGCTGCATTCGGTCGAGAACGAGAGCGAGATCGACCTGCTGAAGAAGGCCGATCTC
GCGATGTACAGCGCCAAGGACGCGGGCAAGAACTGCTACCAGTTCTATGCGCCGCACCTGTCGCATCGCGCCGATCACCT
GATGCGCTGGGAGCAGCAGTTGCGCGTCGCGCTGTCGGACGGGCAATTGTTCCTCGCCTACCAGCCGAAGATCGATCTCA
CGTACCGCTGCATCACCGGCTTCGAGGCGCTCGTGCGCTGGGACCATCCGGAGCACGGCGTGATCTCCGCGAACGAATTC
ATTTCGATCGCCGAATCGACCGGGCTCATCGTTCCGATCGGAGACTTCGTGATCCGCACCGCGTGCGAGCAGCTCGCGCG
CTGGCGCGACGAAGGCCACGACAAGCTCACGCTCGCCGTCAACATCTCGCCCGTGCAGTTCTGGCGCGGCGACCTGATCG
ACACGATCTCGCGCGCGCTCGTCGAGACCGGGATCGAGGCGCGCCGCCTCGAGCTCGAGATCACCGAGACCGCGATGATG
GAATACCCTGAGCTCGTGTCGGAGAAGATCGTCGCGCTGAAGAAGCTCGGTATCCGCGTCGCGCTCGACGATTTCGGCAC
CGGCTATTCGTCGCTGTCCTATCTGCACCGCTTCTCGGTCGATACGCTGAAGGTCGACCGGTCGTTCATCCAAGCGATTC
CGGCCGACCGCAGCGTGTGCGTGATGGTGTCGTCGATCGTGCACCTAGCGCGCTCGCTCGGGCTCACGGTCGTCGTCGAG
GGGACGGAGACCGAAGAGCAGATCGCGTGGCTCGCCGCGCTCGGGCGCATCGAGGCCCAAGGCTTCCTGTTCTCGCGGCC
GGTGCCCTCCGACGGCATTCCGGCCCTGCTCGCGCGCTTCGGCGTCTGCGGCGGCGACCGCGCGTCCATGGCCCGCCGCG
ACGCCGCGAGCCCCGCCAAACAGTCGTTCGGCAGCGACTAA

Upstream 100 bases:

>100_bases
CATTCAGTAATATCGGGCCTCGTCTATTGTCTTCTTTATCGGCCCGTTTACTCGGTTATCCTGTCGGATCGCCCATGCGC
GCAAGGACACCTTTCGTCCG

Downstream 100 bases:

>100_bases
ACGGCGCCCCCGATCTGCGCCGCGACGGCGTGCGCCGGGCCATGCGCCGCCTACTCGTTTTTGCTCATACAACGAACGAA
TTTCCGGGTGCACAATGAAA

Product: EAL/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 785

Protein sequence:

>786_residues
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKESAFRDAGASAAILSTALEQHTVKAIH
QVDQITRFVKYEFEKSPARFNLARTVEKGVVPSDTLIQVSILDARGRLIANTAELHPKPIDLSDREHFRVHMQRNDDDLY
ISKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPTYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKSPGT
FSASGVYPVSERASGIYVDPIDGIRRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTSFITLAMLAFFGVATG
LIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARL
SDAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEF
ISIAESTGLIVPIGDFVIRTACEQLARWRDEGHDKLTLAVNISPVQFWRGDLIDTISRALVETGIEARRLELEITETAMM
EYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIPALLARFGVCGGDRASMARRDAASPAKQSFGSD

Sequences:

>Translated_786_residues
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKESAFRDAGASAAILSTALEQHTVKAIH
QVDQITRFVKYEFEKSPARFNLARTVEKGVVPSDTLIQVSILDARGRLIANTAELHPKPIDLSDREHFRVHMQRNDDDLY
ISKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPTYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKSPGT
FSASGVYPVSERASGIYVDPIDGIRRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTSFITLAMLAFFGVATG
LIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARL
SDAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEF
ISIAESTGLIVPIGDFVIRTACEQLARWRDEGHDKLTLAVNISPVQFWRGDLIDTISRALVETGIEARRLELEITETAMM
EYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIPALLARFGVCGGDRASMARRDAASPAKQSFGSD
>Mature_785_residues
SSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKESAFRDAGASAAILSTALEQHTVKAIHQ
VDQITRFVKYEFEKSPARFNLARTVEKGVVPSDTLIQVSILDARGRLIANTAELHPKPIDLSDREHFRVHMQRNDDDLYI
SKPVFGRVSRHWTLQMTRRLNHPDGSFAGVVVVSEDPTYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKSPGTF
SASGVYPVSERASGIYVDPIDGIRRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVYLLMTSFITLAMLAFFGVATGL
IGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLS
DAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADLA
MYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFI
SIAESTGLIVPIGDFVIRTACEQLARWRDEGHDKLTLAVNISPVQFWRGDLIDTISRALVETGIEARRLELEITETAMME
YPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEG
TETEEQIAWLAALGRIEAQGFLFSRPVPSDGIPALLARFGVCGGDRASMARRDAASPAKQSFGSD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=37.1495327102804, Blast_Score=266, Evalue=4e-72,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=33.3333333333333, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI226510982, Length=385, Percent_Identity=30.3896103896104, Blast_Score=189, Evalue=9e-49,
Organism=Escherichia coli, GI1787055, Length=426, Percent_Identity=28.169014084507, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=35.4166666666667, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=34.4262295081967, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=32.3529411764706, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=32.9268292682927, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=33.0578512396694, Blast_Score=129, Evalue=9e-31,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=32.1428571428571, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=32.1138211382114, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=396, Percent_Identity=25.2525252525253, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=238, Percent_Identity=29.8319327731092, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=37.5757575757576, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=201, Percent_Identity=34.8258706467662, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=248, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.3373493975904, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=31.2883435582822, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787410, Length=233, Percent_Identity=25.3218884120172, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=32.5443786982249, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86771; Mature: 86640

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKESAFRDA
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
GASAAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPARFNLARTVEKGVVPSDTLIQVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEE
ILDARGRLIANTAELHPKPIDLSDREHFRVHMQRNDDDLYISKPVFGRVSRHWTLQMTRR
EECCCCCEEEEHHHCCCCCCCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCEEEEEHHH
LNHPDGSFAGVVVVSEDPTYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKSPGT
CCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC
FSASGVYPVSERASGIYVDPIDGIRRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVY
CCCCCCCCHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHCCCHH
LLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALARIGGDEFVV
CCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEE
VVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHH
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITG
HHEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEHHHHH
FEALVRWDHPEHGVISANEFISIAESTGLIVPIGDFVIRTACEQLARWRDEGHDKLTLAV
HHHHHCCCCCCCCEEEHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
NISPVQFWRGDLIDTISRALVETGIEARRLELEITETAMMEYPELVSEKIVALKKLGIRV
ECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
ALDDFGTGYSSLSYLHRFSVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
EECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIPALLARFGVCGGDRASMARRDAASPAK
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHH
QSFGSD
HCCCCC
>Mature Secondary Structure 
SSSRSHAARAARPVRATRKSRRRRALFAIPLLGTLALALLWVAIIARLSVEKESAFRDA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
GASAAILSTALEQHTVKAIHQVDQITRFVKYEFEKSPARFNLARTVEKGVVPSDTLIQVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEE
ILDARGRLIANTAELHPKPIDLSDREHFRVHMQRNDDDLYISKPVFGRVSRHWTLQMTRR
EECCCCCEEEEHHHCCCCCCCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCEEEEEHHH
LNHPDGSFAGVVVVSEDPTYFTNDFYNNATLGKDGVIAVISDTGAVLARSTGSTQKSPGT
CCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC
FSASGVYPVSERASGIYVDPIDGIRRIVSYRHLDGYPLGVMVGLSQAEEFADYHHTRNVY
CCCCCCCCHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHCCCHH
LLMTSFITLAMLAFFGVATGLIGKLLGREREMTQLAEFDLLTGLANRYATLRSLRNDVAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGALARIGGDEFVV
CCCCCEEEEEEEECCCCCCHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEECCCEEEE
VVKGENVERRAERLAEAIVRMFAEPFDVRGSSFVLHASIGIALHSVENESEIDLLKKADL
EEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHH
AMYSAKDAGKNCYQFYAPHLSHRADHLMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITG
HHEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCEEEHHHHH
FEALVRWDHPEHGVISANEFISIAESTGLIVPIGDFVIRTACEQLARWRDEGHDKLTLAV
HHHHHCCCCCCCCEEEHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
NISPVQFWRGDLIDTISRALVETGIEARRLELEITETAMMEYPELVSEKIVALKKLGIRV
ECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
ALDDFGTGYSSLSYLHRFSVDTLKVDRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVE
EECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEE
GTETEEQIAWLAALGRIEAQGFLFSRPVPSDGIPALLARFGVCGGDRASMARRDAASPAK
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCHHH
QSFGSD
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]