Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 83718740

GI number: 83718740

Start: 1075032

End: 1075928

Strand: Reverse

Name: yddE [C]

Synonym: BTH_I0949

Alternate gene names: 83718740

Gene position: 1075928-1075032 (Counterclockwise)

Preceding gene: 83720814

Following gene: 83719449

Centisome position: 28.25

GC content: 75.92

Gene sequence:

>897_bases
ATGGCAACCGCGATGGCCGTCGCTCCGGGCGCGGTGCGCTTCAAGCAGGTCGACGTGTTCACGTCGGTGCCGTTCAAGGG
CAATCCGCTCGCCGTCGTATTCGACGCGCACGCGCTGTCCGACGCCGACATGCTCGAGATCGCGCGCTGGACCAACCTGT
CCGAGACCGCGTTCCTCGTCGCGCCGACCGATCCCGCCGCCGACTATCGCGTGCGCATCTTCACGCCGGGCGGCGAGTTG
CCGTTCGCCGGCCATCCGACGCTCGGCGCCGCGCACGCGTTTCTCGACGCGGGCGCGCAGCCGCGCGTGCCCGGGCGGCT
CGTCCAGCAATGCGGCGCGGGGCTCGTCGAGCTCGCCGAGCGTGACGGCGGCTGGGCGTTCGCCGCACCGCCCGCGCGCG
TGACGCCGCTTGCCGAGCGCGAGTGGCCCGCGCTCGCGGCCGCGCTGCGCACCGGCGCGATCGATTTCGACGTGCCGCCG
CAGGCGGTCGACAACGGCGCGCCGTGGCTCGTCGTGCGGCTCGCGTCGGCCGCCGACTGCCTCGCGCTCGCGCCGGACCA
CGCGGCCCTCGCGCCGATCGTCGCCGCGCTCGGCGCGGCCGGCCTCGCCGCATACGGCCCGCATCCCGCCGACGGGCCGG
CGACGTTCGAGGTCCGCTGCCTGATGACGGGCGAGGCGTTCGGCGCCGGCGAAGACCCGGTGACGGGCAGCGCGAATGCG
GCGATCGCGGGCGTCCTCGCGCAAGCGGGCCGCCGCCCGGGCCGCCGCTATACCGCGCGCCAGGGCACGGCGCTCGGCCG
CGACGGCCGCATCTCGGTCGATTACGACGACGCCGGCAAGATCTGGATCGGCGGCGCCGCCGTCACGCTCGTCGACGGCG
CCATCCGGCTGCGCTGA

Upstream 100 bases:

>100_bases
GGCGACGCGGGCAAGCACGCGCGCTCGGCGTTCGGCGTCGCGCAGATCCCGCTCGGCGCGTGCGTCGAGATCGAGCTGAT
CGCCGAAGTCGCGTAACGCG

Downstream 100 bases:

>100_bases
GCGCCGTTTTCGCCCGGCCGCGCCGGCCGCGCGACCGAGGCCCCGCGCGGGCCGCGCGCGGGGCCGCACCCTCTTCCCCC
GGTTAGCGATATCCTGCCCA

Product: phenazine biosynthesis protein phzF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MATAMAVAPGAVRFKQVDVFTSVPFKGNPLAVVFDAHALSDADMLEIARWTNLSETAFLVAPTDPAADYRVRIFTPGGEL
PFAGHPTLGAAHAFLDAGAQPRVPGRLVQQCGAGLVELAERDGGWAFAAPPARVTPLAEREWPALAAALRTGAIDFDVPP
QAVDNGAPWLVVRLASAADCLALAPDHAALAPIVAALGAAGLAAYGPHPADGPATFEVRCLMTGEAFGAGEDPVTGSANA
AIAGVLAQAGRRPGRRYTARQGTALGRDGRISVDYDDAGKIWIGGAAVTLVDGAIRLR

Sequences:

>Translated_298_residues
MATAMAVAPGAVRFKQVDVFTSVPFKGNPLAVVFDAHALSDADMLEIARWTNLSETAFLVAPTDPAADYRVRIFTPGGEL
PFAGHPTLGAAHAFLDAGAQPRVPGRLVQQCGAGLVELAERDGGWAFAAPPARVTPLAEREWPALAAALRTGAIDFDVPP
QAVDNGAPWLVVRLASAADCLALAPDHAALAPIVAALGAAGLAAYGPHPADGPATFEVRCLMTGEAFGAGEDPVTGSANA
AIAGVLAQAGRRPGRRYTARQGTALGRDGRISVDYDDAGKIWIGGAAVTLVDGAIRLR
>Mature_297_residues
ATAMAVAPGAVRFKQVDVFTSVPFKGNPLAVVFDAHALSDADMLEIARWTNLSETAFLVAPTDPAADYRVRIFTPGGELP
FAGHPTLGAAHAFLDAGAQPRVPGRLVQQCGAGLVELAERDGGWAFAAPPARVTPLAEREWPALAAALRTGAIDFDVPPQ
AVDNGAPWLVVRLASAADCLALAPDHAALAPIVAALGAAGLAAYGPHPADGPATFEVRCLMTGEAFGAGEDPVTGSANAA
IAGVLAQAGRRPGRRYTARQGTALGRDGRISVDYDDAGKIWIGGAAVTLVDGAIRLR

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=288, Percent_Identity=32.6388888888889, Blast_Score=108, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6321818, Length=296, Percent_Identity=35.1351351351351, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30583; Mature: 30452

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAMAVAPGAVRFKQVDVFTSVPFKGNPLAVVFDAHALSDADMLEIARWTNLSETAFLV
CCCCEEECCCCEEEEEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEE
APTDPAADYRVRIFTPGGELPFAGHPTLGAAHAFLDAGAQPRVPGRLVQQCGAGLVELAE
ECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHH
RDGGWAFAAPPARVTPLAEREWPALAAALRTGAIDFDVPPQAVDNGAPWLVVRLASAADC
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEEECCCCCE
LALAPDHAALAPIVAALGAAGLAAYGPHPADGPATFEVRCLMTGEAFGAGEDPVTGSANA
EEECCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCH
AIAGVLAQAGRRPGRRYTARQGTALGRDGRISVDYDDAGKIWIGGAAVTLVDGAIRLR
HHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEECCCCCEEECCEEEEEECCEEECC
>Mature Secondary Structure 
ATAMAVAPGAVRFKQVDVFTSVPFKGNPLAVVFDAHALSDADMLEIARWTNLSETAFLV
CCCEEECCCCEEEEEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEE
APTDPAADYRVRIFTPGGELPFAGHPTLGAAHAFLDAGAQPRVPGRLVQQCGAGLVELAE
ECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHH
RDGGWAFAAPPARVTPLAEREWPALAAALRTGAIDFDVPPQAVDNGAPWLVVRLASAADC
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEEECCCCCE
LALAPDHAALAPIVAALGAAGLAAYGPHPADGPATFEVRCLMTGEAFGAGEDPVTGSANA
EEECCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCH
AIAGVLAQAGRRPGRRYTARQGTALGRDGRISVDYDDAGKIWIGGAAVTLVDGAIRLR
HHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEECCCCCEEECCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]