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The map label for this gene is hofQ [C]

Identifier: 83719085

GI number: 83719085

Start: 2813475

End: 2814953

Strand: Reverse

Name: hofQ [C]

Synonym: BTH_I2459

Alternate gene names: 83719085

Gene position: 2814953-2813475 (Counterclockwise)

Preceding gene: 83721444

Following gene: 83720007

Centisome position: 73.9

GC content: 70.05

Gene sequence:

>1479_bases
ATGTGGAGCGTGATCGGCGGGATCGGCGTGCGGCAATCGGCGTCGGTTCGGGCATTGGCTTTTGCTGCGGCGTCGCCGCA
CGCGGCGCGAGCGCGGGCGCATGCGATCGGGCGGCGCGCGGCGGCGGCCGCGCTGTGGTGGCTCGCGCTCGCGCTGGGCG
CGGCGGTCGCGCCGCGGCTCGCTCGTGCGGCCGAGCCCGCGGCGGTGCTCGCGGTGCCCGCCGGCGGCGGCGAGATGGTG
AAGCTGCCGCAGCCCGCGGTCGCGGTGTTCGTCGCGGACCCGGACGTCGCCGACGTGCACGTGCCGACGCCGCAGGCCGT
GTTCGTGCTCGGCAAGAAAGCCGGCACGACGACGCTTTTCGCGCTCGGCGCGAACGACCGGACGATCCTGCGCGAGACCG
TCGTCGTCAACGTCGACACGCCGTCGCTGCAACGCATCCTCGATGCGCGCTTCCCGCAACTGCATCTGACGCTCGCGGGC
GCGCCGGGCTCGCTGATGGTGAGCGGCCGCGTGCCGAGCGCCGCGGACGCGGACGCCGTGGTGCAGACGCTCAAGCCTTA
CCTGCGTCAGCAGGAGTCGCTCGTCAACCGCCTCACGCTCGCGCGGCCGATTCAGGTGCATCTGCGCGTGCGCATCACCG
AGGTCGACCGCAACATCACGCAGCAGCTCGGCATCAACTGGAGCGCGCTCGGCGCGAGCGGCAATTTCGTCGGCGGGCTG
TTCAACGGACGCACGCTGTTCGACACGGCGTCGAAGGCGTTCGATCTGTCGCCGTCGGGTGCGTTCTCGGTGGTGGGCGG
CTTTCACACGTCGCACTACTCGATCGACGGCGTACTCGACGCGCTCGATCAGGAGGGCCTCATCACGATGCTCGCCGAGC
CGAACCTGACCGCGATCTCCGGCCAGACCGCGAGTTTTCTCGCGGGCGGCGAGTTTCCGATTCCGGTCGCGCAGGACACG
ACGGGTGCGATCACGATCCAGTTCAAGCCGTACGGCGTGTCGCTCGACTTCACGCCGACCGTGCTCGCCGACAACCGGAT
CAGCCTCAAGGTGCGCCCGGAGGTGAGCGAGATCGATCCGACCAACAGCGTGACGACGGGCAGCATCAAGGTGCCGGCGC
TGACGGTGCGGCGCGTCGACACGACGGTCGAGCTGTCGAGCGGACAGAGCTTCGCGATCGGCGGCCTGCTGCAGAGCAAG
AGCAGCGACGTGCTCGCCGAGCTGCCGGGGCTCGCGCGGCTGCCCGTGCTCGGCAAGCTGTTCTCGTCGCGCAATTATCT
GAACGACAAGACCGAGGTCGTCGTGATCGTCACGCCGTACATCGTGCAGCCGGCGAATCCGGGCGAGCTGCGCGACGCGC
TCGACGACATCACGCGCCCGAGCAGCGACATCGAATTCGTGCTGCAGCGCTCGCTCGGCATCGATCCGCTCGGCGGCGAC
GCGCCACGGCTCACGGGCCCGGCGGGATTCGTCTACTGA

Upstream 100 bases:

>100_bases
CGATTCCGACGCTGCCGCCGCTGCCGGGAACGGCGGCGGCGCCCGCCGGCGCGCGGCCGGCGGCGTGAACGATGTCGATC
GATCTGGAGGACGAGTCGAA

Downstream 100 bases:

>100_bases
CGGCGCAAGGCAAGAGGGACACGGAGGCATTCGATGGCGATTCGATCGGAACACCCGCTGCGCCGCCATGCATCGCGCGC
GGTGGCCGCGTGCGCGTGGG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MWSVIGGIGVRQSASVRALAFAAASPHAARARAHAIGRRAAAAALWWLALALGAAVAPRLARAAEPAAVLAVPAGGGEMV
KLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAG
APGSLMVSGRVPSAADADAVVQTLKPYLRQQESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGL
FNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDT
TGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSK
SSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGIDPLGGD
APRLTGPAGFVY

Sequences:

>Translated_492_residues
MWSVIGGIGVRQSASVRALAFAAASPHAARARAHAIGRRAAAAALWWLALALGAAVAPRLARAAEPAAVLAVPAGGGEMV
KLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAG
APGSLMVSGRVPSAADADAVVQTLKPYLRQQESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGL
FNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDT
TGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSK
SSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGIDPLGGD
APRLTGPAGFVY
>Mature_492_residues
MWSVIGGIGVRQSASVRALAFAAASPHAARARAHAIGRRAAAAALWWLALALGAAVAPRLARAAEPAAVLAVPAGGGEMV
KLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAG
APGSLMVSGRVPSAADADAVVQTLKPYLRQQESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGL
FNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDT
TGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSK
SSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGIDPLGGD
APRLTGPAGFVY

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=241, Percent_Identity=30.2904564315353, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87082242, Length=312, Percent_Identity=25.9615384615385, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51583; Mature: 51583

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSVIGGIGVRQSASVRALAFAAASPHAARARAHAIGRRAAAAALWWLALALGAAVAPRL
CCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF
HHCCCCCEEEEEECCCCCEEECCCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEE
ALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAV
EECCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCHHHH
VQTLKPYLRQQESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGL
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHCCCEEEECCCCCEEEEE
FNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAIS
CCCCEEECCCCHHEECCCCCCEEEEECCCCCCEEHHHHHHHCCCCCEEEEEECCCEEEEC
GQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDP
CCCEEEEECCCCCCCCCCCCCCEEEEEEEECEEEECCCCEEEECCEEEEEECCCHHHCCC
TNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKL
CCCEEECEEECCEEEEEEECEEEEECCCCEEEEEHHHCCCCCCHHHHCCCCCCCHHHHHH
FSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGIDPLGGD
HHCCCCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
APRLTGPAGFVY
CCCCCCCCCCCC
>Mature Secondary Structure
MWSVIGGIGVRQSASVRALAFAAASPHAARARAHAIGRRAAAAALWWLALALGAAVAPRL
CCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF
HHCCCCCEEEEEECCCCCEEECCCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEE
ALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAV
EECCCCCEEEEEEEEEEECCHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCHHHH
VQTLKPYLRQQESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGGL
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHHHHHHHHCCCEEEECCCCCEEEEE
FNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPNLTAIS
CCCCEEECCCCHHEECCCCCCEEEEECCCCCCEEHHHHHHHCCCCCEEEEEECCCEEEEC
GQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEIDP
CCCEEEEECCCCCCCCCCCCCCEEEEEEEECEEEECCCCEEEECCEEEEEECCCHHHCCC
TNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGKL
CCCEEECEEECCEEEEEEECEEEEECCCCEEEEEHHHCCCCCCHHHHCCCCCCCHHHHHH
FSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGIDPLGGD
HHCCCCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
APRLTGPAGFVY
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]