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The map label for this gene is abgR [H]

Identifier: 83718942

GI number: 83718942

Start: 811090

End: 812106

Strand: Reverse

Name: abgR [H]

Synonym: BTH_I0704

Alternate gene names: 83718942

Gene position: 812106-811090 (Counterclockwise)

Preceding gene: 83719842

Following gene: 83719407

Centisome position: 21.32

GC content: 71.39

Gene sequence:

>1017_bases
ATGCGGGCGTGTCTCCTCAACGTCGTCGTCATTGGTTTCCACAGTATCGGCGGCGCACACATTCCTCGATACTGTATTTT
CTGCAATAAGCCATTACACGACAGCATGACTTTCGACCTGCGCCAGTTGCGCGCCTTTACGACGATCGCCGCGAGCGGCA
GCCTCGGCCGCGCGGCCGACGCGCTGCACGTCACGCAGCCGGCGCTGAGCCGCATCCTGAAGCGGCTCGAGGAGCAGATC
GGCGCGCCGCTCTTCGAGCGCCATTCGAAGGGCGTGCAGCTCACCGCGATCGGCGAGGCGCTGCTGCCGCACGCGACGCT
GCTGCAGCACGAGGCCGAGCACGCCCGCGAGGAAATCGACGCGCTGCGCGGGCTCGCGAGGGGCACGATCAAGGTCGGCG
CGGTCGGCAGCATCGCGAGCCTCGTGCTGCCCGTGGCGATCGGGCGCGTGCTCGACCGCTGGCCGAACCTGCGCGTCGTG
ATCGTCGAAGGCGTGTGGGACCGGCTCGTCGATGCGCTTCTCACGCACGAGATCGACGTGGCGCTGAGCACGCGCGTGCC
GGACACCGACGACATCGTCGCGACCGCCGACTGCCGATGGGACGACGTGAGCCACGTCGTCGCGGCGCCCGATCATCCGC
TGCGCGCGGCGCGCGCGCCGCTCACGCTCGCCGGCACGCGCGCCGCGCGCTGGGCGATCCCGCCGCGCGGCACCGCGCCG
TACGAGCAGATGCGCGCGGCGTTCGACGCGCAGGGGCTCGCGCCGCCCGACATCGCGGTCGAAACGCGCTCGGTGACGGC
GCTCAAGAGCCTCGTCGCGCACGCGGGCTTCCTGAGCTGGATGGCCGAGCCGATGTACCGCGCGGAACGCCGCGCGCGCA
CGATCGACACGCTCGCCGTCGAAGGCGTCGCCGCCACCCGCACGCTGACCGCGTTCCGCCGCCGCCACGGAATCCTGCCC
GGCCCGGCCGCGAAGCTGCTCGAACAGCTTGCGCTGCTGACCCGCGAGCCGTTCTGA

Upstream 100 bases:

>100_bases
CACCTTGCGGATGCCGAACCGGCGCAGCAGGTCGATTACGGCGTCGCGAACCGTGTACGGCGCGTGCGCCGGCGCGTCGG
CGCGAAGATCGGGGGGGGTC

Downstream 100 bases:

>100_bases
CGCCGTTGGGCGGCGCGCCGCGGCGCCGCGCCCGCGCATCGATTGGCGCGCCGCAACATCGAAAGCCCGCTCGATCGCCT
TGACTTTCGCTCACCCGAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRACLLNVVVIGFHSIGGAHIPRYCIFCNKPLHDSMTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQI
GAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAREEIDALRGLARGTIKVGAVGSIASLVLPVAIGRVLDRWPNLRVV
IVEGVWDRLVDALLTHEIDVALSTRVPDTDDIVATADCRWDDVSHVVAAPDHPLRAARAPLTLAGTRAARWAIPPRGTAP
YEQMRAAFDAQGLAPPDIAVETRSVTALKSLVAHAGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILP
GPAAKLLEQLALLTREPF

Sequences:

>Translated_338_residues
MRACLLNVVVIGFHSIGGAHIPRYCIFCNKPLHDSMTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQI
GAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAREEIDALRGLARGTIKVGAVGSIASLVLPVAIGRVLDRWPNLRVV
IVEGVWDRLVDALLTHEIDVALSTRVPDTDDIVATADCRWDDVSHVVAAPDHPLRAARAPLTLAGTRAARWAIPPRGTAP
YEQMRAAFDAQGLAPPDIAVETRSVTALKSLVAHAGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILP
GPAAKLLEQLALLTREPF
>Mature_338_residues
MRACLLNVVVIGFHSIGGAHIPRYCIFCNKPLHDSMTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQI
GAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAREEIDALRGLARGTIKVGAVGSIASLVLPVAIGRVLDRWPNLRVV
IVEGVWDRLVDALLTHEIDVALSTRVPDTDDIVATADCRWDDVSHVVAAPDHPLRAARAPLTLAGTRAARWAIPPRGTAP
YEQMRAAFDAQGLAPPDIAVETRSVTALKSLVAHAGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILP
GPAAKLLEQLALLTREPF

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=252, Percent_Identity=32.5396825396825, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081904, Length=274, Percent_Identity=29.5620437956204, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI145693105, Length=186, Percent_Identity=30.1075268817204, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI157672245, Length=235, Percent_Identity=26.8085106382979, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789506, Length=246, Percent_Identity=25.2032520325203, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=30.379746835443, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=152, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=30, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786508, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=236, Percent_Identity=27.5423728813559, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=179, Percent_Identity=27.9329608938547, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=237, Percent_Identity=24.0506329113924, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=226, Percent_Identity=23.0088495575221, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=177, Percent_Identity=25.9887005649718, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36732; Mature: 36732

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRACLLNVVVIGFHSIGGAHIPRYCIFCNKPLHDSMTFDLRQLRAFTTIAASGSLGRAAD
CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
ALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAREEID
HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHH
ALRGLARGTIKVGAVGSIASLVLPVAIGRVLDRWPNLRVVIVEGVWDRLVDALLTHEIDV
HHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHE
ALSTRVPDTDDIVATADCRWDDVSHVVAAPDHPLRAARAPLTLAGTRAARWAIPPRGTAP
EEECCCCCCCCEEEECCCCCCCCCCEEECCCCCHHHHCCCEEEECCCHHEECCCCCCCCC
YEQMRAAFDAQGLAPPDIAVETRSVTALKSLVAHAGFLSWMAEPMYRAERRARTIDTLAV
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGVAATRTLTAFRRRHGILPGPAAKLLEQLALLTREPF
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRACLLNVVVIGFHSIGGAHIPRYCIFCNKPLHDSMTFDLRQLRAFTTIAASGSLGRAAD
CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
ALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAREEID
HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHH
ALRGLARGTIKVGAVGSIASLVLPVAIGRVLDRWPNLRVVIVEGVWDRLVDALLTHEIDV
HHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHE
ALSTRVPDTDDIVATADCRWDDVSHVVAAPDHPLRAARAPLTLAGTRAARWAIPPRGTAP
EEECCCCCCCCEEEECCCCCCCCCCEEECCCCCHHHHCCCEEEECCCHHEECCCCCCCCC
YEQMRAAFDAQGLAPPDIAVETRSVTALKSLVAHAGFLSWMAEPMYRAERRARTIDTLAV
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGVAATRTLTAFRRRHGILPGPAAKLLEQLALLTREPF
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]