Click here to switch to the map view.

The map label for this gene is rpoH [H]

Identifier: 83718896

GI number: 83718896

Start: 507559

End: 508494

Strand: Reverse

Name: rpoH [H]

Synonym: BTH_I0456

Alternate gene names: 83718896

Gene position: 508494-507559 (Counterclockwise)

Preceding gene: 83720826

Following gene: 83721213

Centisome position: 13.35

GC content: 65.49

Gene sequence:

>936_bases
GTGAGCAACGCATTGACCCTTCCGAACACGCTGCGCCCGGCGTCCGCTAAGGCCGCATCGGCAGGCTCGCTGGCGCTCGC
ATCCCACTCGATGCTGCCGGGCCAGTTGGGCAACATCGACGCCTATATCCAGGCCGTCAACCGGATTCCGCTGCTGACGG
CGGAGGAAGAGCGTCAATACGCGACCGAATACCGCGAGCAAAACAGTCTCGACGCCGCACGCCGGCTCGTGCTGTCGCAC
CTGCGGCTCGTGGTGTCGATCGCACGCAACTATCTCGGCTACGGCCTGCCGCACGGCGACCTGATCCAGGAAGGCAATAT
CGGCCTGATGAAGGCGGTCAAGCGTTTCGATCCCGCTCAGAACGTGCGCCTCGTGTCGTACGCGATCCACTGGATCAAGG
CCGAGATTCACGAGTACATCCTGCGCAACTGGCGCATGGTCAAGGTGGCGACGACGAAGGCGCAGCGCAAGCTGTTCTTC
AACCTGCGCAGCCACAAGAAGGGCACGCAGGCGTTCACGCCGGAGGAAATCGACGGCCTCGCGCAGGAACTGAACGTCAA
GCGCGAGGAAGTGGCCGAGATGGAAACCCGTCTGTCGGGCGGCGACATCGCGCTCGAAGGCCAGATCGACGATGGCGAGG
AGTCGTATGCGCCGATCGCGTATCTCGCCGATTCGCACAACGAGCCGACCGCGGTGCTCGCCGCGCGGCAGCGCGACATG
TTGCAGACGGACGGCATCGCGCGCGCGCTCGACTCGCTCGACGCGCGCAGCCGCCGGATCATCGAAGCGCGCTGGCTGAA
CGTCGACGACGACGGCTCGGGCGGCTCGACGCTGCACGATCTCGCGGCCGAGTTCGGCGTGTCGGCGGAGCGCATCCGCC
AAATCGAGGCAAGCGCGATGAAGAAGATGCGCACGGCGCTCGCCGCGTACGCATAA

Upstream 100 bases:

>100_bases
TCCTTCTAAGGATTAGCACTCCAGTAGACGGAGTGCTAAGATTCATCGAGGAATCGCCCCGGCAAAGGGGCTCGTCCCTG
GTTCCAAAGGAGTTTTCTAC

Downstream 100 bases:

>100_bases
CGCTCGAACGGACGGCCCGTCCGGGCCGCGCCGAGGCGAAACAGCCCGCTGTCGCAAGACAGCGGGCTTTTTTTCGCCCC
GCACGGCCGCGCACACCGCT

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSNALTLPNTLRPASAKAASAGSLALASHSMLPGQLGNIDAYIQAVNRIPLLTAEEERQYATEYREQNSLDAARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
LQTDGIARALDSLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA

Sequences:

>Translated_311_residues
MSNALTLPNTLRPASAKAASAGSLALASHSMLPGQLGNIDAYIQAVNRIPLLTAEEERQYATEYREQNSLDAARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
LQTDGIARALDSLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA
>Mature_310_residues
SNALTLPNTLRPASAKAASAGSLALASHSMLPGQLGNIDAYIQAVNRIPLLTAEEERQYATEYREQNSLDAARRLVLSHL
RLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFN
LRSHKKGTQAFTPEEIDGLAQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDML
QTDGIARALDSLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAAYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=289, Percent_Identity=51.2110726643599, Blast_Score=275, Evalue=3e-75,
Organism=Escherichia coli, GI1789098, Length=271, Percent_Identity=32.1033210332103, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789448, Length=244, Percent_Identity=31.9672131147541, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 34405; Mature: 34274

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALTLPNTLRPASAKAASAGSLALASHSMLPGQLGNIDAYIQAVNRIPLLTAEEERQY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEECHHHHHH
ATEYREQNSLDAARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGTQAFTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
AQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
HHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIARALDSLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAAYA
HHHHHHHHHCC
>Mature Secondary Structure 
SNALTLPNTLRPASAKAASAGSLALASHSMLPGQLGNIDAYIQAVNRIPLLTAEEERQY
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEECHHHHHH
ATEYREQNSLDAARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPAQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGTQAFTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
AQELNVKREEVAEMETRLSGGDIALEGQIDDGEESYAPIAYLADSHNEPTAVLAARQRDM
HHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIARALDSLDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAAYA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]