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The map label for this gene is qseB [H]

Identifier: 83718618

GI number: 83718618

Start: 772946

End: 773671

Strand: Direct

Name: qseB [H]

Synonym: BTH_I0673

Alternate gene names: 83718618

Gene position: 772946-773671 (Clockwise)

Preceding gene: 83719082

Following gene: 83721403

Centisome position: 20.29

GC content: 69.42

Gene sequence:

>726_bases
TTGCGCGCGCGGCGGCGCTACAATGTTCGCCATCTCGAACGCATGCGACGGACGTTTTTCAGGATGCGGATACTGCTGGT
AGAAGACGATCGGATGATCGCCGACGGAGTGCGCAAGGCGCTGAAGGCCGACGGCTGCGCGGTCGACTGGGTGCAGGACG
GCGACGCGGCGCTCACCGCGCTCGGCGGCGAGGCGTACGATCTGCTGCTGCTCGATCTCGGGCTGCCCAAGCGCGACGGC
ATCGACGTGCTGCGCACGCTGCGCGCGCGCGGGCTCGCGCTGCCGGTGCTGATCCTGACCGCGCGCGACGCCGTCGCCGA
TCGCGTGAAGGGCCTCGACGCCGGCGCCGACGACTACCTCGTCAAGCCGTTCGATCTCGACGAGCTCGCCGCGCGGATGC
GCGCGCTGATCCGCCGCCAGTCGGGGCGCAGCGAATCGGTGATCCGGCACGGCGCGCTCACGCTCGATCCGGCGTCGCAC
CAGGTGACGCTCGACGGCGCGCCCGTCGCGCTTTCTGCACGCGAGTTCGCGCTGCTGGAGGCGCTGCTCGCGCGCCCGGG
CGCGGTGCTGTCGAAGAGCCAGCTCGAGGAGAAGATGTACGGCTGGGGCGAGGAAATCGGCAGCAACACCGTCGAGGTCT
ATATCCACGCGCTGCGCAAGAAGCTCGGCTCGGACCTGATCCGCAACGTCCGCGGCCTCGGTTACATGGTCGTGAAGGAA
GCGTAG

Upstream 100 bases:

>100_bases
GGCGGCGTGAGCAAAAGGGGCGTGCGCATGCGCGCGACGCAAGCCGCACATTGTAGAGAAAACGGCGCGCGGGCAGCGTC
GAAATCGGCCGAAGGTCCGT

Downstream 100 bases:

>100_bases
CGCGTGAGGTCGATTCGCCATCAATTGCTGATCTGGCTGCTCGCGATCGTCGTGGCCGGGGTGGGGCTCGCGGGCTGGAT
GATCTACCGGCAGGCGCTCG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRARRRYNVRHLERMRRTFFRMRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDG
IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESVIRHGALTLDPASH
QVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE
A

Sequences:

>Translated_241_residues
MRARRRYNVRHLERMRRTFFRMRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDG
IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESVIRHGALTLDPASH
QVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE
A
>Mature_241_residues
MRARRRYNVRHLERMRRTFFRMRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDG
IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESVIRHGALTLDPASH
QVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE
A

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=53.2407407407407, Blast_Score=226, Evalue=7e-61,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=46.0829493087558, Blast_Score=190, Evalue=6e-50,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=39.3665158371041, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=36.0730593607306, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=38.7387387387387, Blast_Score=143, Evalue=8e-36,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=39.5454545454545, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=39.1891891891892, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=36.986301369863, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=33.0434782608696, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=35.8078602620087, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=34.0909090909091, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=30.6306306306306, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=29.9559471365639, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=29.2372881355932, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788550, Length=162, Percent_Identity=32.7160493827161, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790437, Length=130, Percent_Identity=35.3846153846154, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790299, Length=134, Percent_Identity=32.8358208955224, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787487, Length=116, Percent_Identity=33.6206896551724, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994928, Length=128, Percent_Identity=33.59375, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1788713, Length=116, Percent_Identity=33.6206896551724, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788191, Length=122, Percent_Identity=32.7868852459016, Blast_Score=62, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=184, Percent_Identity=27.1739130434783, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26726; Mature: 26726

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARRRYNVRHLERMRRTFFRMRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTA
CCCCHHCCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCEEEE
LGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYL
CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHCCCCCCCCCE
VKPFDLDELAARMRALIRRQSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLE
ECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCEEEECCCCEEECHHHHHHHH
ALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE
HHHHCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
A
C
>Mature Secondary Structure
MRARRRYNVRHLERMRRTFFRMRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTA
CCCCHHCCHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCEEEE
LGGEAYDLLLLDLGLPKRDGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYL
CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHEEHHHHHHHHHHHCCCCCCCCCE
VKPFDLDELAARMRALIRRQSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLE
ECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCEEEECCCCEEECHHHHHHHH
ALLARPGAVLSKSQLEEKMYGWGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE
HHHHCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]