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The map label for this gene is ydhC [H]

Identifier: 83595060

GI number: 83595060

Start: 4282564

End: 4283253

Strand: Direct

Name: ydhC [H]

Synonym: Rru_A3731

Alternate gene names: 83595060

Gene position: 4282564-4283253 (Clockwise)

Preceding gene: 83595059

Following gene: 83595063

Centisome position: 98.39

GC content: 65.07

Gene sequence:

>690_bases
ATGGCGGAGCAGGCGGACGGCGGATCGGGACGGGCCGATGGCAAGGAGCAGGCCTATCGACGCCTCCGCGACTGGATCAT
CTATTCCGAACTGCGCCCCGGCTCGGCGATCAAGGAACGCGAACTGGCCGAGCGGCTGGGCGTCAGCCGAACGCCGCTGC
GCGAGATCCTTCAACGTCTGCATTACGTCGGGCTGGTCGACTGGCAACCCAATATCGGCGTTTTCGTCGCCCCCATCGAC
TATGGGCGGATCCGCGAGATCTTCGAGGTCAGGTTGGCCCTTGAGCGCGCCGCGGTCTCCCTGGCGACCGTCAAGGCGAC
GGCCGCCCAGATCGACGATCTCGATGCTCTTCTCGGCCGCTGCCGTCAGGCCATCGACACGGGCGAATACGTCACCTTCA
TCTCGCTTGACGCCCTGTTCCACGAAAAGATCCGCGATATCGCCGGCAATGCCTATCTGGCGACCCTGATGGACAACGCC
CATAACGTCGCCCTGCGCTTTTGGTACCTGTACCGCGAGTCCCTGGCCGATACCTACCACGATATCGAAAACCTGGGGCT
GGTGGTCGAGGCAATGCGCCGCCGCGACGCCCCGGCCGCGGCCAATGCCATCGCCGCCCATATCGTCGGCTTCCTGCGCG
CCTTTCATGCCCAGGAGATCGACGCGCTGTGCCGGGCGATGGCCGTGTGA

Upstream 100 bases:

>100_bases
CCATCGACGACCAGGAGTAGCTGGCGGAAAAGGGAACCTTGGGTGTCCTTGCCGCCGCCCCTTGTCTTCAAAGTCTCGAC
CGGATGGCACAGGAGGATCG

Downstream 100 bases:

>100_bases
GGCGGTTCGCTTTATAGCGCCTCGCCGCGCAGCAGCCTGTCGACCTGATCCTGGCTGAGCCCGCCAACCGCCTTGGCCTG
GGCGTCATTGACATGGTTGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSRTPLREILQRLHYVGLVDWQPNIGVFVAPID
YGRIREIFEVRLALERAAVSLATVKATAAQIDDLDALLGRCRQAIDTGEYVTFISLDALFHEKIRDIAGNAYLATLMDNA
HNVALRFWYLYRESLADTYHDIENLGLVVEAMRRRDAPAAANAIAAHIVGFLRAFHAQEIDALCRAMAV

Sequences:

>Translated_229_residues
MAEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSRTPLREILQRLHYVGLVDWQPNIGVFVAPID
YGRIREIFEVRLALERAAVSLATVKATAAQIDDLDALLGRCRQAIDTGEYVTFISLDALFHEKIRDIAGNAYLATLMDNA
HNVALRFWYLYRESLADTYHDIENLGLVVEAMRRRDAPAAANAIAAHIVGFLRAFHAQEIDALCRAMAV
>Mature_228_residues
AEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSRTPLREILQRLHYVGLVDWQPNIGVFVAPIDY
GRIREIFEVRLALERAAVSLATVKATAAQIDDLDALLGRCRQAIDTGEYVTFISLDALFHEKIRDIAGNAYLATLMDNAH
NVALRFWYLYRESLADTYHDIENLGLVVEAMRRRDAPAAANAIAAHIVGFLRAFHAQEIDALCRAMAV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=194, Percent_Identity=27.319587628866, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081914, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25681; Mature: 25549

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSRTPLREILQRL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
HYVGLVDWQPNIGVFVAPIDYGRIREIFEVRLALERAAVSLATVKATAAQIDDLDALLGR
HHCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CRQAIDTGEYVTFISLDALFHEKIRDIAGNAYLATLMDNAHNVALRFWYLYRESLADTYH
HHHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
DIENLGLVVEAMRRRDAPAAANAIAAHIVGFLRAFHAQEIDALCRAMAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSRTPLREILQRL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
HYVGLVDWQPNIGVFVAPIDYGRIREIFEVRLALERAAVSLATVKATAAQIDDLDALLGR
HHCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CRQAIDTGEYVTFISLDALFHEKIRDIAGNAYLATLMDNAHNVALRFWYLYRESLADTYH
HHHHHCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
DIENLGLVVEAMRRRDAPAAANAIAAHIVGFLRAFHAQEIDALCRAMAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]