Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 83594997

GI number: 83594997

Start: 4214765

End: 4215238

Strand: Direct

Name: ybaK [H]

Synonym: Rru_A3668

Alternate gene names: 83594997

Gene position: 4214765-4215238 (Clockwise)

Preceding gene: 83594996

Following gene: 83594999

Centisome position: 96.83

GC content: 68.57

Gene sequence:

>474_bases
ATGTCCAAGACCACCCGCGCCACCCAGGCGCTTGATCGCGCCCATGTCGTTCACGAGGTGGTGAGCTATGAGTACGATCC
CGATGCGCCGAGCATCGGGCTTCAGGCCGCCCAGGCCATCGGCGAACACCCCCGCCGGGTGCTGAAAACCCTGATGGCCG
AGGTCGACGGCAAGGCGGTCTGCGCCGTCGTGCCCTCCGACCGCGAGGTCAGCATGAAAAAGCTGGCCGCCGTGTTCGGC
GGCAAGGCGGCCCATATGATGAAGCCCGCCGACGCCGAACGGCTGACCGGCTTTCATGTGGGCGGCATCAGCCCCTTTGG
CCAGAAGCGCACCGTGCCGACGGTGGTCGAGGAAAGCGCCCTGGCCGAGGAGCGGGTCTATATGAACGGCGGCCAGCGCG
GCCTTCAGGTGCGCTTGGCGCCGGCCGATGCCGTCGCCGCCCTTGGCGCCCGGGTGGCCTCGATCGTGGCCTAA

Upstream 100 bases:

>100_bases
TCATCGGGTCTTGAGGGCAGATGGAGCGGGGAAGGACTTTGCCGTCCGCCGTCGCGGCGCTAGACTCGGCCTCACGCCAG
ACTGTCAAGCGAGCCGTCCC

Downstream 100 bases:

>100_bases
TATCCCGATAGGAGGGCGACTCGTCGTCGCGTGCTGGTCCGGCGCACTCGCGAGTCGTCCTAGATTTTTTCCTTGTGCAA
GATCTTCTCGAGGAAGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKTTRATQALDRAHVVHEVVSYEYDPDAPSIGLQAAQAIGEHPRRVLKTLMAEVDGKAVCAVVPSDREVSMKKLAAVFG
GKAAHMMKPADAERLTGFHVGGISPFGQKRTVPTVVEESALAEERVYMNGGQRGLQVRLAPADAVAALGARVASIVA

Sequences:

>Translated_157_residues
MSKTTRATQALDRAHVVHEVVSYEYDPDAPSIGLQAAQAIGEHPRRVLKTLMAEVDGKAVCAVVPSDREVSMKKLAAVFG
GKAAHMMKPADAERLTGFHVGGISPFGQKRTVPTVVEESALAEERVYMNGGQRGLQVRLAPADAVAALGARVASIVA
>Mature_156_residues
SKTTRATQALDRAHVVHEVVSYEYDPDAPSIGLQAAQAIGEHPRRVLKTLMAEVDGKAVCAVVPSDREVSMKKLAAVFGG
KAAHMMKPADAERLTGFHVGGISPFGQKRTVPTVVEESALAEERVYMNGGQRGLQVRLAPADAVAALGARVASIVA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=35.7142857142857, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16586; Mature: 16455

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTRATQALDRAHVVHEVVSYEYDPDAPSIGLQAAQAIGEHPRRVLKTLMAEVDGKAV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCEE
CAVVPSDREVSMKKLAAVFGGKAAHMMKPADAERLTGFHVGGISPFGQKRTVPTVVEESA
EEECCCCCHHHHHHHHHHHCCCHHHHCCCCCHHHHCCEECCCCCCCCCCCCCHHHHHHHH
LAEERVYMNGGQRGLQVRLAPADAVAALGARVASIVA
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTTRATQALDRAHVVHEVVSYEYDPDAPSIGLQAAQAIGEHPRRVLKTLMAEVDGKAV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCEE
CAVVPSDREVSMKKLAAVFGGKAAHMMKPADAERLTGFHVGGISPFGQKRTVPTVVEESA
EEECCCCCHHHHHHHHHHHCCCHHHHCCCCCHHHHCCEECCCCCCCCCCCCCHHHHHHHH
LAEERVYMNGGQRGLQVRLAPADAVAALGARVASIVA
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]