| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is yhdF [H]
Identifier: 83594996
GI number: 83594996
Start: 4213824
End: 4214678
Strand: Direct
Name: yhdF [H]
Synonym: Rru_A3667
Alternate gene names: 83594996
Gene position: 4213824-4214678 (Clockwise)
Preceding gene: 83594994
Following gene: 83594997
Centisome position: 96.81
GC content: 66.08
Gene sequence:
>855_bases ATGAGCGATGACGTGCTACAACCGCCCCAGGACCAAGACAGCCAGCCCGGTCATGAACTGGAGATGACGCCCCAACCCGA CTGCCAGCCCCGCCACCCCGGTTCGGACCGGCTGGCCGGCAAGGTCGCCTTGATTTCGGGCGGCGACAGCGGCATCGGCC GCGCCGTCGCCCTCGCCTTCGCCCGCGAAGGCGCCAAGATCGCCCTGCTCTATCTCGACGAACACGACGACGCCCGGGAA ACCGAGCGCTTGGTGATGGCCGAGGGACGCGAATGTCTGGTGATGCCGGGCGATGTCGGCGACGAGGCGATCTGCATCGA CGCGGTCGCCCAAGTGATCGGCAATTTCGGCGCTCTCGATATCCTGGTCAACAACGCCGCCGAACAACACGAGGTCGAGG ACCTGAGCGACCTGACGGCCGGACAACTGGAAAAGACCTTCCGCACCAATGTCTTCGGCTACATCTATCTGGCCAAGGCC GCCCTTCCCCACCTGCCCAAGGGCGGGTCGATCATCAATACCACCTCGATCACCGCCTATCAGGGCCACCGCACGCTGAT CGACTACAGCGCCACCAAGGGGGCGATCGTCGCCCTCACCCGCAGCCTGTCGCAATCGTTGCTCGATCGCGGCATCCGGG TCAACGCGGTGGCCCCCGGGCCGATCTGGACCCCGCTGATCCCGGCCAGCTTCAGCCCCGATCACGTCGCCAGTCATGGC GCCTCGGTGCCAATGGGCCGCGCCGGCCAGCCCAATGAGGTCGCCCCGGCCTATGTGTTCCTGGCCAGCGACGACGCCTC CTATATCAGCGGTCAGGTGATCCACCCCAATGGCGGGGCGATCATCGGGTCTTGA
Upstream 100 bases:
>100_bases TGGACCGGCCGGGGAACCCCGCCGCGCGGTCCGGGTTTGCAAGGGGGGACGGGCGCCAAACCGGCCCCTCCCCCCTTCCC CCGTTTCGTTGGAGGTCGCG
Downstream 100 bases:
>100_bases GGGCAGATGGAGCGGGGAAGGACTTTGCCGTCCGCCGTCGCGGCGCTAGACTCGGCCTCACGCCAGACTGTCAAGCGAGC CGTCCCATGTCCAAGACCAC
Product: short-chain dehydrogenase/reductase sDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MSDDVLQPPQDQDSQPGHELEMTPQPDCQPRHPGSDRLAGKVALISGGDSGIGRAVALAFAREGAKIALLYLDEHDDARE TERLVMAEGRECLVMPGDVGDEAICIDAVAQVIGNFGALDILVNNAAEQHEVEDLSDLTAGQLEKTFRTNVFGYIYLAKA ALPHLPKGGSIINTTSITAYQGHRTLIDYSATKGAIVALTRSLSQSLLDRGIRVNAVAPGPIWTPLIPASFSPDHVASHG ASVPMGRAGQPNEVAPAYVFLASDDASYISGQVIHPNGGAIIGS
Sequences:
>Translated_284_residues MSDDVLQPPQDQDSQPGHELEMTPQPDCQPRHPGSDRLAGKVALISGGDSGIGRAVALAFAREGAKIALLYLDEHDDARE TERLVMAEGRECLVMPGDVGDEAICIDAVAQVIGNFGALDILVNNAAEQHEVEDLSDLTAGQLEKTFRTNVFGYIYLAKA ALPHLPKGGSIINTTSITAYQGHRTLIDYSATKGAIVALTRSLSQSLLDRGIRVNAVAPGPIWTPLIPASFSPDHVASHG ASVPMGRAGQPNEVAPAYVFLASDDASYISGQVIHPNGGAIIGS >Mature_283_residues SDDVLQPPQDQDSQPGHELEMTPQPDCQPRHPGSDRLAGKVALISGGDSGIGRAVALAFAREGAKIALLYLDEHDDARET ERLVMAEGRECLVMPGDVGDEAICIDAVAQVIGNFGALDILVNNAAEQHEVEDLSDLTAGQLEKTFRTNVFGYIYLAKAA LPHLPKGGSIINTTSITAYQGHRTLIDYSATKGAIVALTRSLSQSLLDRGIRVNAVAPGPIWTPLIPASFSPDHVASHGA SVPMGRAGQPNEVAPAYVFLASDDASYISGQVIHPNGGAIIGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=35.0649350649351, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.5396825396825, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=32.7935222672065, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=32.5490196078431, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI10190704, Length=283, Percent_Identity=30.0353356890459, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=30.7086614173228, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=27.5193798449612, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=34.5, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=31.8725099601594, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=29.4820717131474, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=29.8449612403101, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=29.0196078431373, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=35.0877192982456, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=31.7948717948718, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=33.6842105263158, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7706318, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI142976729, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=28.9099526066351, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=278, Percent_Identity=45.3237410071942, Blast_Score=244, Evalue=7e-66, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=36.6533864541833, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.9397590361446, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=33.969465648855, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=32.4110671936759, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.3643724696356, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=31.3492063492063, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=32.1285140562249, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=28.6290322580645, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=29.8449612403101, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.1317829457364, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787526, Length=247, Percent_Identity=24.6963562753036, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788891, Length=241, Percent_Identity=30.2904564315353, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787545, Length=255, Percent_Identity=26.6666666666667, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17544670, Length=272, Percent_Identity=33.4558823529412, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=33.457249070632, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=32.7067669172932, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=33.7301587301587, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=34.4827586206897, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=33.8461538461538, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=33.2075471698113, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=34.6007604562738, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=30.5220883534137, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=35.5555555555556, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=32.0610687022901, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=33.0798479087452, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=32.183908045977, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=31.4176245210728, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=31.1023622047244, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.9548872180451, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17555706, Length=279, Percent_Identity=29.3906810035842, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=31.3725490196078, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17565030, Length=277, Percent_Identity=31.4079422382672, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.4878048780488, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.9242424242424, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=29.9212598425197, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.0836653386454, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=31.1284046692607, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=28.515625, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=29.2307692307692, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=27.8225806451613, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17508895, Length=205, Percent_Identity=29.7560975609756, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=35.1724137931034, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=28.1124497991968, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=35.7142857142857, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=32.9365079365079, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=34.3873517786561, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=32.6848249027237, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=28.9156626506024, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=30.1204819277108, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.4516129032258, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI17737361, Length=252, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=33.4645669291339, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=26.7942583732057, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=233, Percent_Identity=30.9012875536481, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007236, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581726, Length=213, Percent_Identity=29.1079812206573, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29893; Mature: 29762
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDVLQPPQDQDSQPGHELEMTPQPDCQPRHPGSDRLAGKVALISGGDSGIGRAVALAF CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH AREGAKIALLYLDEHDDARETERLVMAEGRECLVMPGDVGDEAICIDAVAQVIGNFGALD HCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE ILVNNAAEQHEVEDLSDLTAGQLEKTFRTNVFGYIYLAKAALPHLPKGGSIINTTSITAY EEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHCCCCCCCCCEEEECEEEEE QGHRTLIDYSATKGAIVALTRSLSQSLLDRGIRVNAVAPGPIWTPLIPASFSPDHVASHG CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC ASVPMGRAGQPNEVAPAYVFLASDDASYISGQVIHPNGGAIIGS CCCCCCCCCCCCCCCCEEEEEECCCCCHHCCEEECCCCCEEECC >Mature Secondary Structure SDDVLQPPQDQDSQPGHELEMTPQPDCQPRHPGSDRLAGKVALISGGDSGIGRAVALAF CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH AREGAKIALLYLDEHDDARETERLVMAEGRECLVMPGDVGDEAICIDAVAQVIGNFGALD HCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE ILVNNAAEQHEVEDLSDLTAGQLEKTFRTNVFGYIYLAKAALPHLPKGGSIINTTSITAY EEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHCCCCCCCCCEEEECEEEEE QGHRTLIDYSATKGAIVALTRSLSQSLLDRGIRVNAVAPGPIWTPLIPASFSPDHVASHG CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC ASVPMGRAGQPNEVAPAYVFLASDDASYISGQVIHPNGGAIIGS CCCCCCCCCCCCCCCCEEEEEECCCCCHHCCEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]