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The map label for this gene is yggW [C]

Identifier: 83594968

GI number: 83594968

Start: 4180213

End: 4181457

Strand: Reverse

Name: yggW [C]

Synonym: Rru_A3639

Alternate gene names: 83594968

Gene position: 4181457-4180213 (Counterclockwise)

Preceding gene: 83594969

Following gene: 83594966

Centisome position: 96.06

GC content: 70.6

Gene sequence:

>1245_bases
ATGCCTGGGCGGCTGAGCCCCCCTGCCACCGCCGTCGCCACCGCCGTCGGGGCCCAGGGGGACGAGGGCTTCGGCGTTTA
TGTCCATTGGCCGTTCTGCCTGTCGAAATGCCCCTATTGCGACTTCAACAGCCATGTCGCCGCCGCCCCCCTTGATCAGG
CGGCGTGGCGCCAGGGGCTGCTTCGCGATCTGGAAACCCAGGCCGGAGCCCTGCCGCCCCGGCAACGCCGTCTGACCAGC
GTCTTCTTTGGCGGCGGCACGCCCTCGCTGATGGACCCGGCGACGGTGGGCGCGGTGATCGACAAGGCGCTCGCGCTGTG
GCCGGTGGCCGATGATCTGGAAATCACCCTGGAAGCCAATCCGGGCACGGTGGAGCGCGGGCGCTTCGCCGATTTCCGCC
AAGCCGGCGTCACCCGCCTCTCCCTTGGCGTCCAGTCGCTCGAGGACGAGGCCCTGCGCTTCCTTGGGCGCCGCCATGAC
GCCGCCGGCGCCCTGGCCGCCCTGGAGACGGCGCGCGCCCTGTTCGAGCGCTTCTCGTTCGATCTGATCTATGCCCGCCC
CGGTCAGACCCTGGACGCCTGGGAGGATGAACTGGCCCGGGCCGTAGCCCTCGGCCCCAGCCATCTGTCGGTCTATCAAT
TAACCATCGAGGCCGGCACCCGGTTTTTCGCCGAACACGCCCGGGGCGCCTTCGTTCTGCCCGACGAGGACCTGGGGGCG
GCGCTGTTCGAGCTGACCCGCCAACGCCTGACCGAGGCCGGCCTGCCGGCCTATGAGGTTTCCAACCACGCCCGCCCCGG
CGAGGAATCGCGCCACAACCTGATCTATTGGCGCGGCGGCGAGTATCTGGGCGTCGGCCCGGGGGCCCATGGCCGCCTGA
CCAGCGCCACGGACGAAGGCGCCTTTCAGGCCACCGTCGCCCACCGCGCCCCCGAGGTCTGGCTGCGCCACGTAAGCCAG
CAGGGTCACGGCCTGAAAAGCACCACGGCGATTGACCGCCGCCAGCGCGCCGAGGAAATGGTGATGATGGGCCTGCGCCT
CGAGGAGGGGCTGGTGGAAGAGCGCCTTCTGCGCCTGACCGGCCTGGGCTTCGCCGAGGTGCTTGATGCCGGCGGGCTGG
CGATGGCCAGCGAAGAAGGCCTGCTCCACCGCCCCGCCCCGGGCGTTCTGCGGGCGACCGGCGCCGGGATGGCGGTGCTC
AACGCCCTGACCGCCGCCCTTCTCGCTTACGATCCCAACCGATAG

Upstream 100 bases:

>100_bases
TCCTGGGCGAGGGCGCGGCCGAAACCTTTGGCGAGATGGACCCGGCGGCCAAACACGCCATCAGCCACCGCGCCCGCGCC
TTCGCCTTGCTGGTGGCGGC

Downstream 100 bases:

>100_bases
CCGCCGTCTTCGGTCAGCAGCACGCGGGCTTTGACCGGATCGGCCTCCATCTTGCGCCGCAGGCGATAGATGTGGGTTTC
CAGGGTGTGGGTGGTGATGC

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPGRLSPPATAVATAVGAQGDEGFGVYVHWPFCLSKCPYCDFNSHVAAAPLDQAAWRQGLLRDLETQAGALPPRQRRLTS
VFFGGGTPSLMDPATVGAVIDKALALWPVADDLEITLEANPGTVERGRFADFRQAGVTRLSLGVQSLEDEALRFLGRRHD
AAGALAALETARALFERFSFDLIYARPGQTLDAWEDELARAVALGPSHLSVYQLTIEAGTRFFAEHARGAFVLPDEDLGA
ALFELTRQRLTEAGLPAYEVSNHARPGEESRHNLIYWRGGEYLGVGPGAHGRLTSATDEGAFQATVAHRAPEVWLRHVSQ
QGHGLKSTTAIDRRQRAEEMVMMGLRLEEGLVEERLLRLTGLGFAEVLDAGGLAMASEEGLLHRPAPGVLRATGAGMAVL
NALTAALLAYDPNR

Sequences:

>Translated_414_residues
MPGRLSPPATAVATAVGAQGDEGFGVYVHWPFCLSKCPYCDFNSHVAAAPLDQAAWRQGLLRDLETQAGALPPRQRRLTS
VFFGGGTPSLMDPATVGAVIDKALALWPVADDLEITLEANPGTVERGRFADFRQAGVTRLSLGVQSLEDEALRFLGRRHD
AAGALAALETARALFERFSFDLIYARPGQTLDAWEDELARAVALGPSHLSVYQLTIEAGTRFFAEHARGAFVLPDEDLGA
ALFELTRQRLTEAGLPAYEVSNHARPGEESRHNLIYWRGGEYLGVGPGAHGRLTSATDEGAFQATVAHRAPEVWLRHVSQ
QGHGLKSTTAIDRRQRAEEMVMMGLRLEEGLVEERLLRLTGLGFAEVLDAGGLAMASEEGLLHRPAPGVLRATGAGMAVL
NALTAALLAYDPNR
>Mature_413_residues
PGRLSPPATAVATAVGAQGDEGFGVYVHWPFCLSKCPYCDFNSHVAAAPLDQAAWRQGLLRDLETQAGALPPRQRRLTSV
FFGGGTPSLMDPATVGAVIDKALALWPVADDLEITLEANPGTVERGRFADFRQAGVTRLSLGVQSLEDEALRFLGRRHDA
AGALAALETARALFERFSFDLIYARPGQTLDAWEDELARAVALGPSHLSVYQLTIEAGTRFFAEHARGAFVLPDEDLGAA
LFELTRQRLTEAGLPAYEVSNHARPGEESRHNLIYWRGGEYLGVGPGAHGRLTSATDEGAFQATVAHRAPEVWLRHVSQQ
GHGLKSTTAIDRRQRAEEMVMMGLRLEEGLVEERLLRLTGLGFAEVLDAGGLAMASEEGLLHRPAPGVLRATGAGMAVLN
ALTAALLAYDPNR

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=307, Percent_Identity=43.9739413680782, Blast_Score=237, Evalue=1e-62,
Organism=Escherichia coli, GI1789325, Length=387, Percent_Identity=38.5012919896641, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI87082341, Length=419, Percent_Identity=23.8663484486874, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 44590; Mature: 44459

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRLSPPATAVATAVGAQGDEGFGVYVHWPFCLSKCPYCDFNSHVAAAPLDQAAWRQGL
CCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCEECCCCHHHHHHHHH
LRDLETQAGALPPRQRRLTSVFFGGGTPSLMDPATVGAVIDKALALWPVADDLEITLEAN
HHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
PGTVERGRFADFRQAGVTRLSLGVQSLEDEALRFLGRRHDAAGALAALETARALFERFSF
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
DLIYARPGQTLDAWEDELARAVALGPSHLSVYQLTIEAGTRFFAEHARGAFVLPDEDLGA
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCEEECCCCHHHH
ALFELTRQRLTEAGLPAYEVSNHARPGEESRHNLIYWRGGEYLGVGPGAHGRLTSATDEG
HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCC
AFQATVAHRAPEVWLRHVSQQGHGLKSTTAIDRRQRAEEMVMMGLRLEEGLVEERLLRLT
CHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFAEVLDAGGLAMASEEGLLHRPAPGVLRATGAGMAVLNALTAALLAYDPNR
CCCHHHHHCCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PGRLSPPATAVATAVGAQGDEGFGVYVHWPFCLSKCPYCDFNSHVAAAPLDQAAWRQGL
CCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCCEECCCCHHHHHHHHH
LRDLETQAGALPPRQRRLTSVFFGGGTPSLMDPATVGAVIDKALALWPVADDLEITLEAN
HHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
PGTVERGRFADFRQAGVTRLSLGVQSLEDEALRFLGRRHDAAGALAALETARALFERFSF
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
DLIYARPGQTLDAWEDELARAVALGPSHLSVYQLTIEAGTRFFAEHARGAFVLPDEDLGA
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCEEECCCCHHHH
ALFELTRQRLTEAGLPAYEVSNHARPGEESRHNLIYWRGGEYLGVGPGAHGRLTSATDEG
HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCC
AFQATVAHRAPEVWLRHVSQQGHGLKSTTAIDRRQRAEEMVMMGLRLEEGLVEERLLRLT
CHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFAEVLDAGGLAMASEEGLLHRPAPGVLRATGAGMAVLNALTAALLAYDPNR
CCCHHHHHCCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]