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The map label for this gene is secB

Identifier: 83594939

GI number: 83594939

Start: 4149880

End: 4150362

Strand: Direct

Name: secB

Synonym: Rru_A3610

Alternate gene names: 83594939

Gene position: 4149880-4150362 (Clockwise)

Preceding gene: 83594938

Following gene: 83594945

Centisome position: 95.34

GC content: 63.56

Gene sequence:

>483_bases
ATGAGCGACGAAACCGCTACCCCGGGTGCCGACCAGGCCCCCCTGATCATCAACGGCCAGTACATCAAGGATCTGTCCTT
CGAGGTGCCCAACGCCCCGCGGATCTTCGCCGAACTCGACGGTCAGCCCGAAGTGCCGATCAATGTCGATGTCACGGCCA
CCCCGGTTGGCGAGCGCTTCTTCGAAGTCAGCCTCAAATTCCGCATCGAAGGCCGTATCAAGGGCAAGGTGGCCTTCATC
GCCGAGCTTGATTATTGCGCCGTGGCCACCGTCAACCTGCCCGACGAGCATATCCATCCGGTGCTGCTGATCGAAGTGCC
GCGCCTGATGTTCCCCTTCGCCCGCAACATCCTGGCCGACCTCACCCGCGACGGCGGCTTCCTGCCGTTGATGATCCAGC
CCCTGGATTTCGCCGCCATGTATCGCAACCGCGTTCAGGCCGCCCAGTCCCAGGCCGCCGCCGAGAACGCCGCGGCAAAC
TGA

Upstream 100 bases:

>100_bases
TTCCCCCCGGCGGGCGGTTGAGCCCCCGGGTCCATCGTGATACGCCTGTGCCCGCCCGACAATCCCGGCACAGCCCGTCA
AAGCCGATTAGAGAGAGACC

Downstream 100 bases:

>100_bases
TCTTCTCCTCTCCCGGGTTGGAGCGGTGCGTGGGACATCTGGTTCCCCCACACCGCTCCACCATCTTGATCGTCAAGCAA
ATCGTCGCCGCGATCCGGTC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSDETATPGADQAPLIINGQYIKDLSFEVPNAPRIFAELDGQPEVPINVDVTATPVGERFFEVSLKFRIEGRIKGKVAFI
AELDYCAVATVNLPDEHIHPVLLIEVPRLMFPFARNILADLTRDGGFLPLMIQPLDFAAMYRNRVQAAQSQAAAENAAAN

Sequences:

>Translated_160_residues
MSDETATPGADQAPLIINGQYIKDLSFEVPNAPRIFAELDGQPEVPINVDVTATPVGERFFEVSLKFRIEGRIKGKVAFI
AELDYCAVATVNLPDEHIHPVLLIEVPRLMFPFARNILADLTRDGGFLPLMIQPLDFAAMYRNRVQAAQSQAAAENAAAN
>Mature_159_residues
SDETATPGADQAPLIINGQYIKDLSFEVPNAPRIFAELDGQPEVPINVDVTATPVGERFFEVSLKFRIEGRIKGKVAFIA
ELDYCAVATVNLPDEHIHPVLLIEVPRLMFPFARNILADLTRDGGFLPLMIQPLDFAAMYRNRVQAAQSQAAAENAAAN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=140, Percent_Identity=27.8571428571429, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_RHORT (Q2RN91)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428691.1
- ProteinModelPortal:   Q2RN91
- SMR:   Q2RN91
- STRING:   Q2RN91
- GeneID:   3837066
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3610
- NMPDR:   fig|1085.1.peg.1887
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q2RN91
- ProtClustDB:   PRK05751
- BioCyc:   RRUB269796:RRU_A3610-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17550; Mature: 17419

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDETATPGADQAPLIINGQYIKDLSFEVPNAPRIFAELDGQPEVPINVDVTATPVGERF
CCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCEE
FEVSLKFRIEGRIKGKVAFIAELDYCAVATVNLPDEHIHPVLLIEVPRLMFPFARNILAD
EEEEEEEEEEEEECCEEEEEEECCEEEEEEECCCHHHCCEEEEEECCHHHHHHHHHHHHH
LTRDGGFLPLMIQPLDFAAMYRNRVQAAQSQAAAENAAAN
HHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDETATPGADQAPLIINGQYIKDLSFEVPNAPRIFAELDGQPEVPINVDVTATPVGERF
CCCCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCEE
FEVSLKFRIEGRIKGKVAFIAELDYCAVATVNLPDEHIHPVLLIEVPRLMFPFARNILAD
EEEEEEEEEEEEECCEEEEEEECCEEEEEEECCCHHHCCEEEEEECCHHHHHHHHHHHHH
LTRDGGFLPLMIQPLDFAAMYRNRVQAAQSQAAAENAAAN
HHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA