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The map label for this gene is psd

Identifier: 83594914

GI number: 83594914

Start: 4128370

End: 4129080

Strand: Reverse

Name: psd

Synonym: Rru_A3585

Alternate gene names: 83594914

Gene position: 4129080-4128370 (Counterclockwise)

Preceding gene: 83594915

Following gene: 83594913

Centisome position: 94.86

GC content: 63.71

Gene sequence:

>711_bases
TTGCGCCGCTTCGACATCGGCTGGAAAACCTACCTGCTTCCCGAGATACATCCCGAGGGCTGGCGGTTCATCAGCATCTT
CGCCGCCGTCACCTTTGGACTGTGGCTTTGGCAAGACTGGCTGGTCGTTCCCGGTCTGGTTCTGACCATCTGGTGCGTCT
ATTTCTTCCGCAATCCCAAGCGCACCGTTCCCGATCGGCTTGGGCTGGTCGTCACCCCGGCCAGCGGCATCGTGCAGATG
GTCGGTCTGGTCGATCCGCCGGCCGAACTGGCCCTTGATCCGCCGGGCCCGCGCCAGCGCATCAGCGTGTTCATGAGCGT
CTTCGATTGCCATGTGAACCGCTGCCCGGTGGGCGGCACGGTGCGCAAGATCGTTTACGCCCCGGGTAAATTCGTCAACG
CCACCCTCGACAAGGCCAGCGCCGACAACGAGCGCAACAGCGTGGTGCTTGATATCGGCCAGAGCCGCGACCTCGCCTTC
GTTCAGATCGCCGGGCTGGTGGCGCGGCGCATCCGCTGCGATCTGGTCGAAGGCCAAAGCGTGCTGACCGGCGAGATCAT
GGGGTTGATCCGTTTTGGCAGCCGTCTTGATATCTATCTGCCGCCCGGCGCCGCGCCGCTGGTCGCCCCCGGGCAAAGCT
GTATTTCCGGGGAAACCGTCCTAGCCGATCTGGCTTCGGCCGAACCCGAACGTTTGGGAGTTCTGCGCTGA

Upstream 100 bases:

>100_bases
GCGTTGAGGGGATTGGGACCCCCCCCCGGCCTGTCCTTCCATCAGAGCGCCCCTCTCGATCGTCGCCCCAGGAACTTTAA
AAAAACCGGAGGATATCCCC

Downstream 100 bases:

>100_bases
TGGTCCGCCACCCCCACGTCCTGCGCCGGAGCACCCCGCGATTTCAGGGGATGCCGTTCAACAAGATGGTCCCCAATATG
CTGACCTTGCTGGCGCTTTG

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRRFDIGWKTYLLPEIHPEGWRFISIFAAVTFGLWLWQDWLVVPGLVLTIWCVYFFRNPKRTVPDRLGLVVTPASGIVQM
VGLVDPPAELALDPPGPRQRISVFMSVFDCHVNRCPVGGTVRKIVYAPGKFVNATLDKASADNERNSVVLDIGQSRDLAF
VQIAGLVARRIRCDLVEGQSVLTGEIMGLIRFGSRLDIYLPPGAAPLVAPGQSCISGETVLADLASAEPERLGVLR

Sequences:

>Translated_236_residues
MRRFDIGWKTYLLPEIHPEGWRFISIFAAVTFGLWLWQDWLVVPGLVLTIWCVYFFRNPKRTVPDRLGLVVTPASGIVQM
VGLVDPPAELALDPPGPRQRISVFMSVFDCHVNRCPVGGTVRKIVYAPGKFVNATLDKASADNERNSVVLDIGQSRDLAF
VQIAGLVARRIRCDLVEGQSVLTGEIMGLIRFGSRLDIYLPPGAAPLVAPGQSCISGETVLADLASAEPERLGVLR
>Mature_236_residues
MRRFDIGWKTYLLPEIHPEGWRFISIFAAVTFGLWLWQDWLVVPGLVLTIWCVYFFRNPKRTVPDRLGLVVTPASGIVQM
VGLVDPPAELALDPPGPRQRISVFMSVFDCHVNRCPVGGTVRKIVYAPGKFVNATLDKASADNERNSVVLDIGQSRDLAF
VQIAGLVARRIRCDLVEGQSVLTGEIMGLIRFGSRLDIYLPPGAAPLVAPGQSCISGETVLADLASAEPERLGVLR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_RHORT (Q2RNB6)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428666.1
- STRING:   Q2RNB6
- GeneID:   3837041
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3585
- NMPDR:   fig|1085.1.peg.1911
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- BioCyc:   RRUB269796:RRU_A3585-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25953; Mature: 25953

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFDIGWKTYLLPEIHPEGWRFISIFAAVTFGLWLWQDWLVVPGLVLTIWCVYFFRNPK
CCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTVPDRLGLVVTPASGIVQMVGLVDPPAELALDPPGPRQRISVFMSVFDCHVNRCPVGGT
CCCHHHCCEEEECHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
VRKIVYAPGKFVNATLDKASADNERNSVVLDIGQSRDLAFVQIAGLVARRIRCDLVEGQS
HHEEEECCCCCEEHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
VLTGEIMGLIRFGSRLDIYLPPGAAPLVAPGQSCISGETVLADLASAEPERLGVLR
HHHHHHHHHHHCCCEEEEEECCCCCCEECCCCHHCCCHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MRRFDIGWKTYLLPEIHPEGWRFISIFAAVTFGLWLWQDWLVVPGLVLTIWCVYFFRNPK
CCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RTVPDRLGLVVTPASGIVQMVGLVDPPAELALDPPGPRQRISVFMSVFDCHVNRCPVGGT
CCCHHHCCEEEECHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
VRKIVYAPGKFVNATLDKASADNERNSVVLDIGQSRDLAFVQIAGLVARRIRCDLVEGQS
HHEEEECCCCCEEHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
VLTGEIMGLIRFGSRLDIYLPPGAAPLVAPGQSCISGETVLADLASAEPERLGVLR
HHHHHHHHHHHCCCEEEEEECCCCCCEECCCCHHCCCHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA