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The map label for this gene is infC [H]

Identifier: 83594817

GI number: 83594817

Start: 4014437

End: 4014958

Strand: Direct

Name: infC [H]

Synonym: Rru_A3488

Alternate gene names: 83594817

Gene position: 4014437-4014958 (Clockwise)

Preceding gene: 83594816

Following gene: 83594822

Centisome position: 92.23

GC content: 58.43

Gene sequence:

>522_bases
ATGCAGGCTCCGCCGTCCAAGGATGGACCGCGCGCCAACCGGGAAATCAGAATCCCCGAAGTCCGTCTCATCGACGAAAA
TGGCGACAACGTGGGCGTCGTGTCCACGCGGGATGCCTTGGCCCGTGCCGAAGCGGCCGGTCTCGATCTGGTCGAGATTT
CGCCCAACGCCGAGCCGCCCGTCTGCAAGATTCTCGATCTAGGTAAGTTTAAGTACGAAGCCCAGAAGAAGAAGAACGAG
GCGAAGAAGAAGCAGAAAGTCATCGAGATCAAGGAAATCAAGCTTCGTCCGAATATCGACGAGCATGACTACGACGTCAA
GATGCGCGCCGCCAAGCGTTTCCTGGAGGAGGGCGACAAGGTCAAAGTGACCATGCGCTTCCGGGGCCGTGAAATGGCCC
ACCAGGATCTGGGCATGAACGTGCTGAAGCGGGTCAGCGAGGATGTCGCCGATCTCGCCAAGGTGGAGCAGCATCCCAAG
CTCGAAGGCCGGCAGATGATCATGGTGATGGCGCCCAAATAA

Upstream 100 bases:

>100_bases
GCCCGGGCCCCTTCGGGAGATCTCTCCCGGGGGCCGGAGCCGCCGCGGTCATCCCTGTTTTTGAAACCATTGGGAGATTG
GAAACATAGCCAGGCCACCG

Downstream 100 bases:

>100_bases
GGGCACCGTCTCCGGCTTCTCCTCGCGGGAAGCCACCCGATGTGACCGCGCTAAAAATACACGTGCCTAAAATACACGAG
GGGCCGTCCCGCCAGGACGG

Product: translation initiation factor 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQAPPSKDGPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNAEPPVCKILDLGKFKYEAQKKKNE
AKKKQKVIEIKEIKLRPNIDEHDYDVKMRAAKRFLEEGDKVKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPK
LEGRQMIMVMAPK

Sequences:

>Translated_173_residues
MQAPPSKDGPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNAEPPVCKILDLGKFKYEAQKKKNE
AKKKQKVIEIKEIKLRPNIDEHDYDVKMRAAKRFLEEGDKVKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPK
LEGRQMIMVMAPK
>Mature_173_residues
MQAPPSKDGPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNAEPPVCKILDLGKFKYEAQKKKNE
AKKKQKVIEIKEIKLRPNIDEHDYDVKMRAAKRFLEEGDKVKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPK
LEGRQMIMVMAPK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=164, Percent_Identity=65.2439024390244, Blast_Score=200, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 19636; Mature: 19636

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPPSKDGPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNAEPP
CCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEECHHHHHHHHHCCCEEEEECCCCCCC
VCKILDLGKFKYEAQKKKNEAKKKQKVIEIKEIKLRPNIDEHDYDVKMRAAKRFLEEGDK
EEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCE
VKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPKLEGRQMIMVMAPK
EEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MQAPPSKDGPRANREIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNAEPP
CCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEECHHHHHHHHHCCCEEEEECCCCCCC
VCKILDLGKFKYEAQKKKNEAKKKQKVIEIKEIKLRPNIDEHDYDVKMRAAKRFLEEGDK
EEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCE
VKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPKLEGRQMIMVMAPK
EEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA