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The map label for this gene is yciR [C]

Identifier: 83594807

GI number: 83594807

Start: 4002091

End: 4003848

Strand: Reverse

Name: yciR [C]

Synonym: Rru_A3478

Alternate gene names: 83594807

Gene position: 4003848-4002091 (Counterclockwise)

Preceding gene: 83594814

Following gene: 83594805

Centisome position: 91.98

GC content: 67.63

Gene sequence:

>1758_bases
GTGGCCGAGGTCAAGACACGCGACGAGCACGACGAGGAGCCTCCGCGGTTCGACGCCCAGGCCGCCACCATCGCGCCGGA
GACGATCCTTCTGCACCCCGGCCCGGCGGCCATCGTCGCGCTGGGCGGCGGCGAGGCCCTGTGCAACGCCCTGGGCGAAC
CCCTGCGCCCGCTGTTTTCGCCGGAAGCCGCCGACAGCCTGTTGCCGGAGATCCGCAGCGCCCTGGAAACCGGCGTTCCC
CAGCAAAAGGTCGTGGATGTCGGGCGCGACGGCCTGCCCGCCCAATTCGACCTGATCATCCTGCCCACCGCCGAGCCGGG
CCGGGTGGTGGTGATCGGCCGCGACGTCACCTTGGAAAGAACCCTGCGCAAGGCGCTGACCGACAGCCGCCAGCGCTATA
AGGATTTCGTCGATCTGTCGATCGACTTCACCTGGGAAACCGGACCGGACGGCCGCTTCGTTTTCGTTTCCCCCGATGGC
GCCCTTGGCTATGCCGCCCGCGATCTGGTGGGCGCCCTGCCCTGGACCTTGATGGACATCACCGATGCCCAATCGGGGGC
GACGGTCTTCAACTCGCCGGTCCGGGTCAAGGATGTCGATATCTGGGTCCGCCGCCGCGACGGCACTCTGGCTTGTCTCA
AGACCTCCTCGATGCCGGTTTTCGACGCCAGCGGCGAATGGAGCGGCGGCCGGGGCGTCTGCCACGACATCACCGAACAG
CACGACCGCGACAAGGCGCTGGCCCGGGCGCTCAACCGCCAACGCGTCGTCGCCAATGTCGAGCGCACCTTCCGCGACGA
GATTGACCCCTCCAATATGCTCAATGTCGCCGCTGAAGCCCTGGCCCGCAGCGTAGGCGGTGATGGTTGCCTAATTTATC
GGGCGGCGCTTGATGATGGCCCCGACCGGCCGTTCCTGCCGCGCGGACGTTTCGGCGAAGGCGGTGACGAAAAGGTCGTC
CTTACCCTTGAGGCCCTAGGCGAGGGAGCCCACGCCCAGACCACCCCCGATGGGAAGTGGACCGTGCTGGTCGCGGCGTC
GCGCTATCGCCGCCAGATCAACGGCGCGGTGGTGCTGTGGCGGCGCATCGAACGCGGCGCGTGGAGCGAGGATGATCATC
TGCTGATCGTCGATGTCGCCAATCAGATCGGCAGCGCCAATGAACAGATCGGTCAGCACGACCGCATCATCTCCATGTCG
CGCACCGACGGGTTGACCGGCCTGCTCAACCGCCGGGCGTTTTTCGACGACATGGACCGCCGGCTGAAAGGGCCTCCCGG
GCTGGTCGAGCGCCGCGCCGGCGAGGAGGCGGCCCGCCGCTCCGAGCGGCCGGCGCGCTCGGCCCTGCTGTATATCGATC
TGGACAACTTCAAATGGGTCAATGACGCCCATGGCCATCTGCGCGGTGACGAGGCGTTGATGACGGTGCGCAAGATCCTG
ACCGATCATACCCGGGCCACCGATATCGTCGCCCGCCTGGGCGGTGACGAATTCGCCATTTGGCTCGAGGGGGCCGACGC
CGAGGCGGCCAGCGCTAAGGCCGCCGAGATCTTGGCCGAAGACGCCCTCTTGCGCCCCTTCGACGGCTCGCCCGACCGAC
CGCTGTCGTTGTCGATCGGGCTGGCCATCCATGATCCGGCCTCGGGCGAGGGAGTGGAGGATCTGACGGCGCGGGCCGAT
ATGGCCATGTATGCCGCCAAACACGGCGGCAAGGGGCGCTTCAGTCTGTCGCTGCCGCCGCCGCACACTCCGACCTGA

Upstream 100 bases:

>100_bases
CGCGACGGGCGCCCCTTCGTAAGGTGCGACCGCATCCCGTTTCGACTCCGACCCTTCCAACAAGGGGCGCGGTCGGGAGC
CTTACAGGAGAGAGGTCAGG

Downstream 100 bases:

>100_bases
TCGGCCGGCCAAGGCGCAAGATCCCCAGGGCGAGGATCGCCAGCCCGGCGCCATAGCCGCTGACCGCCGCCCAGCCGCCC
AAGCTCCAGGCCAGGGTCGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 584

Protein sequence:

>585_residues
MAEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNALGEPLRPLFSPEAADSLLPEIRSALETGVP
QQKVVDVGRDGLPAQFDLIILPTAEPGRVVVIGRDVTLERTLRKALTDSRQRYKDFVDLSIDFTWETGPDGRFVFVSPDG
ALGYAARDLVGALPWTLMDITDAQSGATVFNSPVRVKDVDIWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQ
HDRDKALARALNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDGPDRPFLPRGRFGEGGDEKVV
LTLEALGEGAHAQTTPDGKWTVLVAASRYRRQINGAVVLWRRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMS
RTDGLTGLLNRRAFFDDMDRRLKGPPGLVERRAGEEAARRSERPARSALLYIDLDNFKWVNDAHGHLRGDEALMTVRKIL
TDHTRATDIVARLGGDEFAIWLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIGLAIHDPASGEGVEDLTARAD
MAMYAAKHGGKGRFSLSLPPPHTPT

Sequences:

>Translated_585_residues
MAEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNALGEPLRPLFSPEAADSLLPEIRSALETGVP
QQKVVDVGRDGLPAQFDLIILPTAEPGRVVVIGRDVTLERTLRKALTDSRQRYKDFVDLSIDFTWETGPDGRFVFVSPDG
ALGYAARDLVGALPWTLMDITDAQSGATVFNSPVRVKDVDIWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQ
HDRDKALARALNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDGPDRPFLPRGRFGEGGDEKVV
LTLEALGEGAHAQTTPDGKWTVLVAASRYRRQINGAVVLWRRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMS
RTDGLTGLLNRRAFFDDMDRRLKGPPGLVERRAGEEAARRSERPARSALLYIDLDNFKWVNDAHGHLRGDEALMTVRKIL
TDHTRATDIVARLGGDEFAIWLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIGLAIHDPASGEGVEDLTARAD
MAMYAAKHGGKGRFSLSLPPPHTPT
>Mature_584_residues
AEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNALGEPLRPLFSPEAADSLLPEIRSALETGVPQ
QKVVDVGRDGLPAQFDLIILPTAEPGRVVVIGRDVTLERTLRKALTDSRQRYKDFVDLSIDFTWETGPDGRFVFVSPDGA
LGYAARDLVGALPWTLMDITDAQSGATVFNSPVRVKDVDIWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQH
DRDKALARALNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDGPDRPFLPRGRFGEGGDEKVVL
TLEALGEGAHAQTTPDGKWTVLVAASRYRRQINGAVVLWRRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMSR
TDGLTGLLNRRAFFDDMDRRLKGPPGLVERRAGEEAARRSERPARSALLYIDLDNFKWVNDAHGHLRGDEALMTVRKILT
DHTRATDIVARLGGDEFAIWLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIGLAIHDPASGEGVEDLTARADM
AMYAAKHGGKGRFSLSLPPPHTPT

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=188, Percent_Identity=33.5106382978723, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=33.8709677419355, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=32.258064516129, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=135, Percent_Identity=37.037037037037, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=35.9375, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=35.5029585798817, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=30.1136363636364, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=29.8850574712644, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=31.9587628865979, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63609; Mature: 63478

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNALGEPLRPLFS
CCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCHHHHHHHCCHHHHHHCC
PEAADSLLPEIRSALETGVPQQKVVDVGRDGLPAQFDLIILPTAEPGRVVVIGRDVTLER
CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCCCHHH
TLRKALTDSRQRYKDFVDLSIDFTWETGPDGRFVFVSPDGALGYAARDLVGALPWTLMDI
HHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEE
TDAQSGATVFNSPVRVKDVDIWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQ
CCCCCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCCCCCCCHHHHHHH
HDRDKALARALNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
PDRPFLPRGRFGEGGDEKVVLTLEALGEGAHAQTTPDGKWTVLVAASRYRRQINGAVVLW
CCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEE
RRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMSRTDGLTGLLNRRAFFDDMDR
EHHHCCCCCCCCCEEEEEECHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
RLKGPPGLVERRAGEEAARRSERPARSALLYIDLDNFKWVNDAHGHLRGDEALMTVRKIL
HHCCCCCHHHHHCCHHHHHHCCCCCHHEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHH
TDHTRATDIVARLGGDEFAIWLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIG
HCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
LAIHDPASGEGVEDLTARADMAMYAAKHGGKGRFSLSLPPPHTPT
EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
AEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNALGEPLRPLFS
CCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCHHHHHHHCCHHHHHHCC
PEAADSLLPEIRSALETGVPQQKVVDVGRDGLPAQFDLIILPTAEPGRVVVIGRDVTLER
CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCCCHHH
TLRKALTDSRQRYKDFVDLSIDFTWETGPDGRFVFVSPDGALGYAARDLVGALPWTLMDI
HHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEE
TDAQSGATVFNSPVRVKDVDIWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQ
CCCCCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCEEECCCCCCCCCCCHHHHHHH
HDRDKALARALNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
PDRPFLPRGRFGEGGDEKVVLTLEALGEGAHAQTTPDGKWTVLVAASRYRRQINGAVVLW
CCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEE
RRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMSRTDGLTGLLNRRAFFDDMDR
EHHHCCCCCCCCCEEEEEECHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
RLKGPPGLVERRAGEEAARRSERPARSALLYIDLDNFKWVNDAHGHLRGDEALMTVRKIL
HHCCCCCHHHHHCCHHHHHHCCCCCHHEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHH
TDHTRATDIVARLGGDEFAIWLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIG
HCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
LAIHDPASGEGVEDLTARADMAMYAAKHGGKGRFSLSLPPPHTPT
EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]