Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 83594703

GI number: 83594703

Start: 3889520

End: 3890998

Strand: Reverse

Name: ydaM [H]

Synonym: Rru_A3374

Alternate gene names: 83594703

Gene position: 3890998-3889520 (Counterclockwise)

Preceding gene: 83594704

Following gene: 83594700

Centisome position: 89.39

GC content: 66.73

Gene sequence:

>1479_bases
ATGAGGCGACTGGTACGGAGTCGCAACGGGACGGTGGGAAGAGTGAGCGAGGGGGTCCGGGGAGGACACAAACGGCTGCG
CGGCGCGAACCGTCCTTGGCCGGGGGTCAGGCGAACCAGGGCTGCCGATGCCATGGGCGAGCTGATCGATCGCCTGCTCA
ATGGCGTGCTGATCGTCGATTCGACGCTGCGCCCGCTCTATGCCAATCGTGAATTCCTGCGCCTGCTTGGCCTGCCCGAC
GCCGACACCTTGCTGCGGCCGGCGGGGCTGGAACGCTTCCTGCCCGAGGACAACCGCCAAGTCCTGCTCGACATGACCCA
TCGGCTGTTCTCCCATCAAAGCCAGCGCGCTTCGCAGCGCCTTGAGGTGGTGCGCGCCGACAACGCCACCCTGTGGCTTG
ATTTCAGCGCCGCCCTTGGCCGTTGGGCGGAGCGCGACGTGGTGCAGATCGCCGTTGTGGACGCCACCGAGCGGGTAACC
CACGAAAGCGAGTTGGAGTTCAACCGGGCGCAATTGGAAAATCAGGCCGTTGAGCTGGTGGCCCTGGCCGAGGATCTGAA
CGCCGAACGCGAACAGCTTGAAACAGCGCGCCTGGACGCCGACGAGGGCCGGCGCTTCTTGCAGACGCTGATCGCCACCA
TTCCCAATCCGTTTTTCCACCAGGACCTCGAGGGCAGGATTCGCGGCTGCAACGCCGCTTTCGCCGCCCTTCACGGCCGC
GACCATCGCACCGACATGTTCGGCCTGACGGTTGCCGATCTAACCGACGCGGCCTTCTCCAGCCGCACCGAACGGCTCGA
CGCGGAGCTTATGGCCAAGGGTGGGAACGTTTCCTATGAAGCGGTCTTCGCCGATGCCGAGGGCCGGGCGCGGACGATGA
TCTACAACAAGGCCGTGCTGACCGACGCCGCCGGCCAAGCCGTCGGGCTGGTGGCGGTCATCACCGACATCACCGAGCAA
AAGCGCATGGAAGAGGCGCTGCGCCGACTGGCCACCACCGATCCCTTGACCGGAGCGCTCAATCGCCGGGCCTTCATGGA
GGCGGCGCGGCGCGATCTCGCCCTCGCCCAGCGCCATGGCGAACCGGTGACCGTGGCCCTGGCCGACATCGACCACTTCA
AGCGGGTCAACGACCAGCATGGCCATGCCACCGGCGACGAGGCGCTCAAAACCTTTGTCGCCACCGTCCACGGCGCGCTG
CGCGCCTCCGATGTCCTGGGACGGATGGGCGGCGAGGAATTCGCCCTGATCCTGCCCCATACCGCCCTGGCTTCGGCGAT
GCTTCTGGCCGACCGTCTGCGCCAGACCCTGGCCAACTTGCGGGTTCCCTGCCCGTCGGGCGAGGTTGAATTCACCGTCA
GCATCGGCTTGGCCGAACTGGGGACCCACGGCACCACCATCGATACGCTGCTGCAGGCGGCCGACGAAGCCCTGTATCGG
GCCAAATCCGCCGGCCGCAACCGGGTGATCGCCGCCTAG

Upstream 100 bases:

>100_bases
GGTGGATCAAGTCTGGGAAACCATCGACCAAAGGCTGCTTTAGAGAAAGACCTCGGTGGGAAGTCCACGCCCCGGGATGA
CGGCCGGGGAGCGCCATGTT

Downstream 100 bases:

>100_bases
CGGGATCCGCTGGCTTTATCGCCGCTTAGCGGGATTCGCAGGCTTTATCACCGCCTAGCGGGATTCGCAGGCTTTATCAC
CGCCTAGCGGGACCCGCAGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELIDRLLNGVLIVDSTLRPLYANREFLRLLGLPD
ADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQRLEVVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVT
HESELEFNRAQLENQAVELVALAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGR
DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVLTDAAGQAVGLVAVITDITEQ
KRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGAL
RASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYR
AKSAGRNRVIAA

Sequences:

>Translated_492_residues
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELIDRLLNGVLIVDSTLRPLYANREFLRLLGLPD
ADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQRLEVVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVT
HESELEFNRAQLENQAVELVALAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGR
DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVLTDAAGQAVGLVAVITDITEQ
KRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGAL
RASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYR
AKSAGRNRVIAA
>Mature_492_residues
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELIDRLLNGVLIVDSTLRPLYANREFLRLLGLPD
ADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQRLEVVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVT
HESELEFNRAQLENQAVELVALAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGR
DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVLTDAAGQAVGLVAVITDITEQ
KRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGAL
RASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYR
AKSAGRNRVIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=43.3155080213904, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=39.6551724137931, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787541, Length=297, Percent_Identity=30.3030303030303, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=38.0952380952381, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=37.6404494382022, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=36.7469879518072, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1788381, Length=199, Percent_Identity=33.1658291457286, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=32.967032967033, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=32.2404371584699, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=184, Percent_Identity=30.9782608695652, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=32.5, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=167, Percent_Identity=28.7425149700599, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=30.625, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 54169; Mature: 54169

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELIDRLLNGVLIVD
CCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
STLRPLYANREFLRLLGLPDADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQR
CCCCHHHCCHHHHHHHCCCCHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LEVVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVTHESELEFNRAQLENQAVELV
HHHEECCCCEEEEEEHHHHCCHHCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHH
ALAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGR
HHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCHHHHHHHCCC
DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVL
CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHH
TDAAGQAVGLVAVITDITEQKRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGALRASDVLGRMGGEEFALILPH
CCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECH
TALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHH
AKSAGRNRVIAA
HHHCCCCCCCCC
>Mature Secondary Structure
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELIDRLLNGVLIVD
CCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
STLRPLYANREFLRLLGLPDADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQR
CCCCHHHCCHHHHHHHCCCCHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LEVVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVTHESELEFNRAQLENQAVELV
HHHEECCCCEEEEEEHHHHCCHHCCCEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHH
ALAEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGR
HHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCHHHHHHHCCC
DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVL
CCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHH
TDAAGQAVGLVAVITDITEQKRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
EPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGALRASDVLGRMGGEEFALILPH
CCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECH
TALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHH
AKSAGRNRVIAA
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]