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The map label for this gene is ygbK [C]

Identifier: 83594472

GI number: 83594472

Start: 3625313

End: 3626581

Strand: Direct

Name: ygbK [C]

Synonym: Rru_A3142

Alternate gene names: 83594472

Gene position: 3625313-3626581 (Clockwise)

Preceding gene: 83594471

Following gene: 83594473

Centisome position: 83.29

GC content: 67.93

Gene sequence:

>1269_bases
ATGCCCCTTCTTGGCTGTATCGCCGATGATTTCACCGGCGCCACCGATCTTGCCGCGATGCTGGTCGGCAATGGCATGCG
CACCGTCTTGATGCTGGGCCGGCCAAAGGCGGCGACCGAGAGTCCCAAGGCCGATGCCGTGGTGGTGGCCCTGAAGTCGC
GCACCACCCCCGCCGCTCAGGCCGTAAGCGACAGCCTGGACGCCTTGACATGGCTGCGCGCGGCGGGGGCGCGGCAGATC
GTCTTCAAATACTGCTCGACCTTCGACAGCACCGCGCAGGGTAATATCGGTCCGGTCGCCGATGCCCTGGCCGAGGCCCT
GGAGACCGATTTCGCCCTGGTTTGCCCGGCCTTTCCGGCCAATGGCCGCACGGTGTATCAGGGACATCTTTTCGTCGGCG
ATCACTTGTTGAACGAAAGCGGCATGCGCGACCATCCGCTAACACCGATGCGCGATGCCAGCGTCGTCCGCCTGCTTGCC
GCCCAAACGCCCCATCGCGTCGGCTTGATCGCCTTGCCGGTGGTCGAGGCTGGCGTTCCGGCTATCGATGAGGCCCTGCG
AGCCCTGCGCGCCACAGGCGTCCGCTATGGCGTGATCGATGCGCTCACCGACGACCATCTGCGCACCATCGGCGCGGCGG
CGGCCGGACACCGGCTGATCACCGGCGGCTCGGGGGTGGCCATGGGTCTGCCCGAAAACTTCCGCCGTCAGGGGCTTTTG
CCTTTCCGCGATGATTCGGCCAGCCTGCCCAAGGTCGATGGCGGTGCAGCGGTGCTGGTCGGATCGTGTTCGCAAGCCAC
CCGTCAGCAAGTGGCGCAAGCCCGCCCCCATTTGCCGACCCTGATCCTTGATCCTTTGGCCACGCCCGAAGCCGGAGCGC
TGATGGCCATCGCCCGCGCCTGGATCGACGCCCAACCGGCTGGCGCGCCACTGATGATCGTCGGCTCGGCCGCGCCCGAG
GCCGTCGCCGCCTTGCAAAAGCGCCTGGGCGCCGGCCCGGCCGGGGCGTTGATCGAAACCGTCCTGGCCGGACTGGCCGA
GGATCTGGTGGAGCGCGGCATCCGCAGCTTGGTGGTGGCCGGGGGCGAGACCTCGGGCGCGGTGGTCTCGCGCCTGGGCA
TCACCAGCTTGCGCGTTGGCGCCGAGATCGCCCCAGGGGTGCCGTGGACGCTGGCCGATCATCCCGCAGGCCCGCTGCGC
CTTGCCCTAAAATCGGGGAACTTCGGTAGCGCCACCTTCTTTCTTGAAGCCCTTGGGCTGCCCCTTTAA

Upstream 100 bases:

>100_bases
TGATCGGTCCCCGCGATCACCGGCTCGCCAGAGCCCTCCGTCCGCCCCGTTTATTGTCCTCTAAACGGGGCGGACGCTCC
CCTTTCAAGGAGCCCGCCCG

Downstream 100 bases:

>100_bases
CCGCAGCGGAAAATCACAGCGATGGATGAAGCCCTATTGCGCGACCAGATGGTCGCCCTTGCCCGCAGTTTGTTCGAGCG
CGGCTTTTCGGTGGGAAGTG

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPLLGCIADDFTGATDLAAMLVGNGMRTVLMLGRPKAATESPKADAVVVALKSRTTPAAQAVSDSLDALTWLRAAGARQI
VFKYCSTFDSTAQGNIGPVADALAEALETDFALVCPAFPANGRTVYQGHLFVGDHLLNESGMRDHPLTPMRDASVVRLLA
AQTPHRVGLIALPVVEAGVPAIDEALRALRATGVRYGVIDALTDDHLRTIGAAAAGHRLITGGSGVAMGLPENFRRQGLL
PFRDDSASLPKVDGGAAVLVGSCSQATRQQVAQARPHLPTLILDPLATPEAGALMAIARAWIDAQPAGAPLMIVGSAAPE
AVAALQKRLGAGPAGALIETVLAGLAEDLVERGIRSLVVAGGETSGAVVSRLGITSLRVGAEIAPGVPWTLADHPAGPLR
LALKSGNFGSATFFLEALGLPL

Sequences:

>Translated_422_residues
MPLLGCIADDFTGATDLAAMLVGNGMRTVLMLGRPKAATESPKADAVVVALKSRTTPAAQAVSDSLDALTWLRAAGARQI
VFKYCSTFDSTAQGNIGPVADALAEALETDFALVCPAFPANGRTVYQGHLFVGDHLLNESGMRDHPLTPMRDASVVRLLA
AQTPHRVGLIALPVVEAGVPAIDEALRALRATGVRYGVIDALTDDHLRTIGAAAAGHRLITGGSGVAMGLPENFRRQGLL
PFRDDSASLPKVDGGAAVLVGSCSQATRQQVAQARPHLPTLILDPLATPEAGALMAIARAWIDAQPAGAPLMIVGSAAPE
AVAALQKRLGAGPAGALIETVLAGLAEDLVERGIRSLVVAGGETSGAVVSRLGITSLRVGAEIAPGVPWTLADHPAGPLR
LALKSGNFGSATFFLEALGLPL
>Mature_421_residues
PLLGCIADDFTGATDLAAMLVGNGMRTVLMLGRPKAATESPKADAVVVALKSRTTPAAQAVSDSLDALTWLRAAGARQIV
FKYCSTFDSTAQGNIGPVADALAEALETDFALVCPAFPANGRTVYQGHLFVGDHLLNESGMRDHPLTPMRDASVVRLLAA
QTPHRVGLIALPVVEAGVPAIDEALRALRATGVRYGVIDALTDDHLRTIGAAAAGHRLITGGSGVAMGLPENFRRQGLLP
FRDDSASLPKVDGGAAVLVGSCSQATRQQVAQARPHLPTLILDPLATPEAGALMAIARAWIDAQPAGAPLMIVGSAAPEA
VAALQKRLGAGPAGALIETVLAGLAEDLVERGIRSLVVAGGETSGAVVSRLGITSLRVGAEIAPGVPWTLADHPAGPLRL
ALKSGNFGSATFFLEALGLPL

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=389, Percent_Identity=44.987146529563, Blast_Score=308, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 43275; Mature: 43144

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLGCIADDFTGATDLAAMLVGNGMRTVLMLGRPKAATESPKADAVVVALKSRTTPAAQ
CCCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHH
AVSDSLDALTWLRAAGARQIVFKYCSTFDSTAQGNIGPVADALAEALETDFALVCPAFPA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
NGRTVYQGHLFVGDHLLNESGMRDHPLTPMRDASVVRLLAAQTPHRVGLIALPVVEAGVP
CCCEEEEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHCCCC
AIDEALRALRATGVRYGVIDALTDDHLRTIGAAAAGHRLITGGSGVAMGLPENFRRQGLL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHCCCC
PFRDDSASLPKVDGGAAVLVGSCSQATRQQVAQARPHLPTLILDPLATPEAGALMAIARA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
WIDAQPAGAPLMIVGSAAPEAVAALQKRLGAGPAGALIETVLAGLAEDLVERGIRSLVVA
HHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
GGETSGAVVSRLGITSLRVGAEIAPGVPWTLADHPAGPLRLALKSGNFGSATFFLEALGL
CCCCCCHHHHHHCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHCC
PL
CC
>Mature Secondary Structure 
PLLGCIADDFTGATDLAAMLVGNGMRTVLMLGRPKAATESPKADAVVVALKSRTTPAAQ
CCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHH
AVSDSLDALTWLRAAGARQIVFKYCSTFDSTAQGNIGPVADALAEALETDFALVCPAFPA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
NGRTVYQGHLFVGDHLLNESGMRDHPLTPMRDASVVRLLAAQTPHRVGLIALPVVEAGVP
CCCEEEEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHCCCC
AIDEALRALRATGVRYGVIDALTDDHLRTIGAAAAGHRLITGGSGVAMGLPENFRRQGLL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCHHHHHCCCC
PFRDDSASLPKVDGGAAVLVGSCSQATRQQVAQARPHLPTLILDPLATPEAGALMAIARA
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
WIDAQPAGAPLMIVGSAAPEAVAALQKRLGAGPAGALIETVLAGLAEDLVERGIRSLVVA
HHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
GGETSGAVVSRLGITSLRVGAEIAPGVPWTLADHPAGPLRLALKSGNFGSATFFLEALGL
CCCCCCHHHHHHCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHCC
PL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]