Click here to switch to the map view.

The map label for this gene is 83594201

Identifier: 83594201

GI number: 83594201

Start: 3304764

End: 3305426

Strand: Direct

Name: 83594201

Synonym: Rru_A2869

Alternate gene names: NA

Gene position: 3304764-3305426 (Clockwise)

Preceding gene: 83594200

Following gene: 83594202

Centisome position: 75.92

GC content: 62.44

Gene sequence:

>663_bases
ATGCCCGCCGATGATCCTCCGAGTATCGACGTCCATGCGCCGGATCCCGTCCCCCGCCGACATGGACGCAGACTCTCGGA
AATTCTGACCGGGCTCGCCGAGGATCCGAGCCGGGAGAGGATTTCCATCGCCGATCTGATCGCCTCGATGCGCGATCGTA
CCCTCGGCGCCCTGATGGTGTTGTTCGCCCTTCCCAATGTCTTGCCCACGCCGCCCGGAACCTCGGCCATTCTGGGGATG
CCGCTGATCATCCTCGCCGCGCAGATGACGGTGGGATTATCGCCCTGGCTTCCCAAGCTGATCGCCGAGCGATCGATCAA
TCGTGGCGACTTCGCCGCGATCGTCACCCGCGCCGTTCCCTGGCTGAACCGGGCGGAAAAGCTGCTCAGCCCCCGTTTGA
CCATTCTGACCCACCCCCCGGCCGAAAACATCGTCGGCTTCGTCTGTCTGGTGCTGGCGATCGTGCTGGCGCTGCCCATC
CCTTTGGGCAACATGTTGCCCGCCCTGGCCATCTGCTGTTTTTCCCTGGGGATTCTGGAACGCGACGGGGTCTGGGTCAT
TGCCGGTCTGGTCACCGCCGTGGCTTCGGTAGCCCTGGTCTGGGGCGTTTTCTATACGGTGATCAAAGGTGCCTTCTTTC
TTATCGCCAATGCCTTTTCATGA

Upstream 100 bases:

>100_bases
TCACATATGCTTATCTTGCCCGTCATTCGCCGCCACGTTAGACCGGACTTCCGGCGGCTTGGCGCCCTCCCATCCGCTCC
CAGTGGAGAACAACGGTTTC

Downstream 100 bases:

>100_bases
ACTGAGCGGCCGCTCGTTGCGGGCCTTTGCCGCAGGAAAGAACCGATGATGTTCGAATGGATCGCTGACCCCTCCGCCTG
GGTAGGTTTGGCCACCCTGG

Product: exopolysaccharide synthesis, ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MPADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDPSRERISIADLIASMRDRTLGALMVLFALPNVLPTPPGTSAILGM
PLIILAAQMTVGLSPWLPKLIAERSINRGDFAAIVTRAVPWLNRAEKLLSPRLTILTHPPAENIVGFVCLVLAIVLALPI
PLGNMLPALAICCFSLGILERDGVWVIAGLVTAVASVALVWGVFYTVIKGAFFLIANAFS

Sequences:

>Translated_220_residues
MPADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDPSRERISIADLIASMRDRTLGALMVLFALPNVLPTPPGTSAILGM
PLIILAAQMTVGLSPWLPKLIAERSINRGDFAAIVTRAVPWLNRAEKLLSPRLTILTHPPAENIVGFVCLVLAIVLALPI
PLGNMLPALAICCFSLGILERDGVWVIAGLVTAVASVALVWGVFYTVIKGAFFLIANAFS
>Mature_219_residues
PADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDPSRERISIADLIASMRDRTLGALMVLFALPNVLPTPPGTSAILGMP
LIILAAQMTVGLSPWLPKLIAERSINRGDFAAIVTRAVPWLNRAEKLLSPRLTILTHPPAENIVGFVCLVLAIVLALPIP
LGNMLPALAICCFSLGILERDGVWVIAGLVTAVASVALVWGVFYTVIKGAFFLIANAFS

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti exoD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 23516; Mature: 23385

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDPSRERISIADLIASMRDRTLGALMV
CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFALPNVLPTPPGTSAILGMPLIILAAQMTVGLSPWLPKLIAERSINRGDFAAIVTRAVP
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WLNRAEKLLSPRLTILTHPPAENIVGFVCLVLAIVLALPIPLGNMLPALAICCFSLGILE
HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
RDGVWVIAGLVTAVASVALVWGVFYTVIKGAFFLIANAFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDPSRERISIADLIASMRDRTLGALMV
CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LFALPNVLPTPPGTSAILGMPLIILAAQMTVGLSPWLPKLIAERSINRGDFAAIVTRAVP
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WLNRAEKLLSPRLTILTHPPAENIVGFVCLVLAIVLALPIPLGNMLPALAICCFSLGILE
HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
RDGVWVIAGLVTAVASVALVWGVFYTVIKGAFFLIANAFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]