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The map label for this gene is ydhM [C]

Identifier: 83594148

GI number: 83594148

Start: 3247917

End: 3248495

Strand: Direct

Name: ydhM [C]

Synonym: Rru_A2816

Alternate gene names: 83594148

Gene position: 3247917-3248495 (Clockwise)

Preceding gene: 83594147

Following gene: 83594159

Centisome position: 74.62

GC content: 66.84

Gene sequence:

>579_bases
GTGAAACCGCGCGAGCGTCTGATCGAGACCGCCATCACCCTCTTCGCCTCCGAAGGGTTTCATGCGACTGGTATCGATCG
GATCCTAGCCGAGGCCGGGGTGGCCAAGATGACCCTCTACCGCCACTTCCGCTCCAAGGACGACCTGATCCTCGCCGCGC
TCGACCGTCATTGGCTGGTGTTCCGCCACTGGCTGGAAGAGCGTCTGGCCGCCTGCCCCGCCACCCCCGGGCCGACCATC
GAAACCCTCTTCGACGGTCTGGCCGCTTGGCAAAGGGGCCAAACCCTTCAGGAAATCCGCTTCCAGGGGTTCTTGCCCAT
TCATGCGGCGGGCGAATTCGGCGCGAGCGATCATCCGATCCACCGCGCCGCCGCCGCCCAGATCCAATCGCTGACCACCT
TGCTTGATGCCGCCAGCCAACGCGTCGGCATCGACGCGGTCGCCGCGGCGCAGATGGGCCTGCTGGTGGTTGGCGCCCTG
ACCATCGCCCATATTCAAAGCGACGGCCGGGCCTTCGAGATCGCCCGCCACAGCGCCCTGACGCTCGCCCAAAGCCACCC
CGCGCCCCTGCCCGCTTAA

Upstream 100 bases:

>100_bases
AAAAGGCTCTAGTCATAGCGGAAGGGATGTATTAGCTTTAAGACTGTAGACCGCCCAAGGTACGGGCGGGCATCCTTTTC
AGACGGAGGCGGCATTGCAG

Downstream 100 bases:

>100_bases
AGCGTACCCGCGATCGCCCGCTTATCCTTGGCACAGAGCGGCCTTGGCTTTATCGCCGGCAGCGCCTCCCCCCTCCATGC
CGCCAAAAGCGATCGGGCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; Regulatory Protein; Transcriptional Regulator Of TetR Family Protein; TetR-Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLILAALDRHWLVFRHWLEERLAACPATPGPTI
ETLFDGLAAWQRGQTLQEIRFQGFLPIHAAGEFGASDHPIHRAAAAQIQSLTTLLDAASQRVGIDAVAAAQMGLLVVGAL
TIAHIQSDGRAFEIARHSALTLAQSHPAPLPA

Sequences:

>Translated_192_residues
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLILAALDRHWLVFRHWLEERLAACPATPGPTI
ETLFDGLAAWQRGQTLQEIRFQGFLPIHAAGEFGASDHPIHRAAAAQIQSLTTLLDAASQRVGIDAVAAAQMGLLVVGAL
TIAHIQSDGRAFEIARHSALTLAQSHPAPLPA
>Mature_192_residues
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLILAALDRHWLVFRHWLEERLAACPATPGPTI
ETLFDGLAAWQRGQTLQEIRFQGFLPIHAAGEFGASDHPIHRAAAAQIQSLTTLLDAASQRVGIDAVAAAQMGLLVVGAL
TIAHIQSDGRAFEIARHSALTLAQSHPAPLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20836; Mature: 20836

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLILAALDRHWLV
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
FRHWLEERLAACPATPGPTIETLFDGLAAWQRGQTLQEIRFQGFLPIHAAGEFGASDHPI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCCCCCCCCH
HRAAAAQIQSLTTLLDAASQRVGIDAVAAAQMGLLVVGALTIAHIQSDGRAFEIARHSAL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
TLAQSHPAPLPA
HHHCCCCCCCCC
>Mature Secondary Structure
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLILAALDRHWLV
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
FRHWLEERLAACPATPGPTIETLFDGLAAWQRGQTLQEIRFQGFLPIHAAGEFGASDHPI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCCCCCCCCH
HRAAAAQIQSLTTLLDAASQRVGIDAVAAAQMGLLVVGALTIAHIQSDGRAFEIARHSAL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
TLAQSHPAPLPA
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA