BacMap

Definition	Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession	NC_007643
Length	4,352,825

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The map label for this gene is cbpA [H]

Identifier: 83593958

GI number: 83593958

Start: 3055572

End: 3056552

Strand: Reverse

Name: cbpA [H]

Synonym: Rru_A2626

Alternate gene names: 83593958

Gene position: 3056552-3055572 (Counterclockwise)

Preceding gene: 83593961

Following gene: 83593956

Centisome position: 70.22

GC content: 67.28

Gene sequence:

>981_bases
ATGAAAGACCCCTATACGGTTCTTGGCGTGGCGCGTGGCGCCAGTCAGGACGAAATCAAGAGCGCCTATCGCAAACTGGC
GCGCAGCATGCACCCGGACGTCAATCAGAACGACCCGGGGGCCGAGGACAAGTTCAAGGATATTTCCGGGGCCTATGACC
TGCTCTCCGATCCCCAGAAGCGGGCCCGGTTCGACCGGGGGGAGATCGACGCCGCCGGCAACGAGCACCGGGGCTTTCGT
CCGGGCACCGGCCCCTATGGCGCGCGCGGCGCCTATCGCGGCGCCTCGGGAAATGACGGGCGCAGCGGCGGTTTCGGCCG
ATTCGATTTCGAATCGACTTTTGGCGAGGACGATCTTTTTTCCGAAATGTTCCGCCGGGCCAGTCGGGGCCAGGGGGGGC
CCGGCGCCGGCACCGCCGGAGCGGCCGGAGCGGGCCCGCGGCCGGTGCGCGGCCAGGATGCCCAATATCGGCTGAAGGTG
ACCTTCGAGGAAGCCGCCCTGGGCAGCACCAAGCGCATCACCCTGACCAATCGCAAGACCCTGGACGTGCGCATCCCGCC
GGGTAGCGAAGACGGGCGGTCGCTGCGCCTCAAGGGCCAGGGGGCCGATGGCAGCAATGGCGGAGCGGCGGGCGACGCCC
TGGTCGAAATCGGCGTCAAGGAGCACGCCTTCTTCCGCCGCGACGGCATCAATGTCGTGGTCGATGTGCCCGTCACGCTT
CAGGAAGTGGTGCTTGGCGGCAAGATCACGGTGCCGACCCTGGAGGGCAAGGTCAGCGTGACCGTGCCGGAGGGGTCGAA
TACCGGCACGGTTCTGCGCCTGCGCGGCAAGGGCATTCCCCAGGAAAACGGCCAGCGCGGCGATCTTCTGGTGCGTCTGG
GCATCACCTTGCCCGATCCCGTGGACCCCAAGCTCAAGACCCTGGTCAAGAAGCTGAAGGACCCCGAGACCGACCCGCGC
GAACAGGCCGGCATGGTCTGA

Upstream 100 bases:

>100_bases
CCGGCGGGTCGGCAAGCGGGCATGAGGAATAGGCCGTGCGGCAACCAAGGCCCCCCGGGGGGAGGCGGAAGGCTGCGGCT
TTCGGCGTGAGATCATAAAG

Downstream 100 bases:

>100_bases
TCGCCGACCCGCTTATATCCGGGCGCCGAGCGGCTCGGCCTGGACCAGAGCGTCGAGGCTGAGCCCCAGGGCCCGGTCGT
AATCACCGCCGGCGGTTTCC

Product: chaperone DnaJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQKRARFDRGEIDAAGNEHRGFR
PGTGPYGARGAYRGASGNDGRSGGFGRFDFESTFGEDDLFSEMFRRASRGQGGPGAGTAGAAGAGPRPVRGQDAQYRLKV
TFEEAALGSTKRITLTNRKTLDVRIPPGSEDGRSLRLKGQGADGSNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTL
QEVVLGGKITVPTLEGKVSVTVPEGSNTGTVLRLRGKGIPQENGQRGDLLVRLGITLPDPVDPKLKTLVKKLKDPETDPR
EQAGMV

Sequences:

>Translated_326_residues
MKDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQKRARFDRGEIDAAGNEHRGFR
PGTGPYGARGAYRGASGNDGRSGGFGRFDFESTFGEDDLFSEMFRRASRGQGGPGAGTAGAAGAGPRPVRGQDAQYRLKV
TFEEAALGSTKRITLTNRKTLDVRIPPGSEDGRSLRLKGQGADGSNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTL
QEVVLGGKITVPTLEGKVSVTVPEGSNTGTVLRLRGKGIPQENGQRGDLLVRLGITLPDPVDPKLKTLVKKLKDPETDPR
EQAGMV
>Mature_326_residues
MKDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQKRARFDRGEIDAAGNEHRGFR
PGTGPYGARGAYRGASGNDGRSGGFGRFDFESTFGEDDLFSEMFRRASRGQGGPGAGTAGAAGAGPRPVRGQDAQYRLKV
TFEEAALGSTKRITLTNRKTLDVRIPPGSEDGRSLRLKGQGADGSNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTL
QEVVLGGKITVPTLEGKVSVTVPEGSNTGTVLRLRGKGIPQENGQRGDLLVRLGITLPDPVDPKLKTLVKKLKDPETDPR
EQAGMV

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI201862587, Length=365, Percent_Identity=32.0547945205479, Blast_Score=144, Evalue=9e-35,
Organism=Homo sapiens, GI201862518, Length=365, Percent_Identity=32.0547945205479, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI56549115, Length=365, Percent_Identity=32.0547945205479, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI5453690, Length=341, Percent_Identity=30.2052785923754, Blast_Score=131, Evalue=9e-31,
Organism=Homo sapiens, GI6631085, Length=352, Percent_Identity=31.25, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI205360838, Length=357, Percent_Identity=28.2913165266106, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI205360840, Length=357, Percent_Identity=28.0112044817927, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI7706495, Length=309, Percent_Identity=29.126213592233, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI39204547, Length=329, Percent_Identity=26.7477203647416, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI4504511, Length=367, Percent_Identity=25.8855585831063, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI194328760, Length=333, Percent_Identity=25.5255255255255, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI194328758, Length=333, Percent_Identity=25.5255255255255, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=62.5, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI5031741, Length=62, Percent_Identity=58.0645161290323, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI194306642, Length=94, Percent_Identity=43.6170212765958, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI194306640, Length=94, Percent_Identity=43.6170212765958, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI68077168, Length=66, Percent_Identity=56.0606060606061, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI68077166, Length=66, Percent_Identity=56.0606060606061, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI29126218, Length=62, Percent_Identity=50, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI22749377, Length=125, Percent_Identity=38.4, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI23503241, Length=72, Percent_Identity=51.3888888888889, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=53.7313432835821, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=53.7313432835821, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI72534740, Length=94, Percent_Identity=42.5531914893617, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI47777312, Length=95, Percent_Identity=46.3157894736842, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=48.3870967741936, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI5453980, Length=106, Percent_Identity=41.5094339622642, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI27151736, Length=128, Percent_Identity=39.84375, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI88501736, Length=128, Percent_Identity=39.84375, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI21553335, Length=132, Percent_Identity=34.0909090909091, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787235, Length=341, Percent_Identity=35.1906158357771, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI1786197, Length=356, Percent_Identity=31.7415730337079, Blast_Score=152, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17534355, Length=348, Percent_Identity=30.7471264367816, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI212645553, Length=343, Percent_Identity=26.2390670553936, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=57.1428571428571, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115532476, Length=65, Percent_Identity=52.3076923076923, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI86563276, Length=125, Percent_Identity=40, Blast_Score=68, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323870, Length=73, Percent_Identity=42.4657534246575, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324265, Length=181, Percent_Identity=34.2541436464088, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323119, Length=64, Percent_Identity=53.125, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321094, Length=165, Percent_Identity=28.4848484848485, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323813, Length=151, Percent_Identity=35.7615894039735, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6320888, Length=121, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322194, Length=62, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324321, Length=169, Percent_Identity=23.6686390532544, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24658562, Length=341, Percent_Identity=32.5513196480938, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24658555, Length=341, Percent_Identity=32.5513196480938, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI85726398, Length=361, Percent_Identity=30.1939058171745, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI18858081, Length=345, Percent_Identity=30.1449275362319, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI45552813, Length=385, Percent_Identity=27.2727272727273, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI45549272, Length=381, Percent_Identity=27.2965879265092, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45552811, Length=385, Percent_Identity=27.2727272727273, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI19920464, Length=309, Percent_Identity=26.537216828479, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI20129487, Length=338, Percent_Identity=28.698224852071, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24584014, Length=338, Percent_Identity=28.698224852071, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355911, Length=90, Percent_Identity=45.5555555555556, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17648033, Length=86, Percent_Identity=44.1860465116279, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584630, Length=86, Percent_Identity=44.1860465116279, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34670; Mature: 34670

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
RARFDRGEIDAAGNEHRGFRPGTGPYGARGAYRGASGNDGRSGGFGRFDFESTFGEDDLF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
SEMFRRASRGQGGPGAGTAGAAGAGPRPVRGQDAQYRLKVTFEEAALGSTKRITLTNRKT
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCEEEEEECCEE
LDVRIPPGSEDGRSLRLKGQGADGSNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTL
EEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHEEEECCCEEEEECCCCH
QEVVLGGKITVPTLEGKVSVTVPEGSNTGTVLRLRGKGIPQENGQRGDLLVRLGITLPDP
HHHHHCCEEEEEEECCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
VDPKLKTLVKKLKDPETDPREQAGMV
CCHHHHHHHHHHCCCCCCCHHHCCCC
>Mature Secondary Structure
MKDPYTVLGVARGASQDEIKSAYRKLARSMHPDVNQNDPGAEDKFKDISGAYDLLSDPQK
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
RARFDRGEIDAAGNEHRGFRPGTGPYGARGAYRGASGNDGRSGGFGRFDFESTFGEDDLF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
SEMFRRASRGQGGPGAGTAGAAGAGPRPVRGQDAQYRLKVTFEEAALGSTKRITLTNRKT
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCEEEEEECCEE
LDVRIPPGSEDGRSLRLKGQGADGSNGGAAGDALVEIGVKEHAFFRRDGINVVVDVPVTL
EEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHEEEECCCEEEEECCCCH
QEVVLGGKITVPTLEGKVSVTVPEGSNTGTVLRLRGKGIPQENGQRGDLLVRLGITLPDP
HHHHHCCEEEEEEECCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
VDPKLKTLVKKLKDPETDPREQAGMV
CCHHHHHHHHHHCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA