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The map label for this gene is cph1 [H]

Identifier: 83593938

GI number: 83593938

Start: 3030546

End: 3032540

Strand: Reverse

Name: cph1 [H]

Synonym: Rru_A2606

Alternate gene names: 83593938

Gene position: 3032540-3030546 (Counterclockwise)

Preceding gene: 83593944

Following gene: 83593937

Centisome position: 69.67

GC content: 67.32

Gene sequence:

>1995_bases
ATGATCAAGGTTCGCCGGGACCACGCCCCGCCCACGCGCAGTCTGATCCAGGTCCTCAGCCTGACCACCGTTGGCGCCTC
GCTGATTTTTTTGCTCATGCTCTCGGTTTTGTGGGGGATCGGCCGCGCCCAGGATATGGCGATCAGCGCCGATATTCTGC
GCTCGAGCCTGTTGATCGAACGCCAACAGGCTTTGCGCGGCACGGTGGAACGGGCGTTGCGCGTGGTTGGCGGCTTGCGC
GCCCAAGCCGAGCGGGAGCGCCTTGACGCGCTCAAGGCCGAAGTCATCCAGGCGCGGAGTCTGGCCAACCATTTGCTTAA
CCGTTATGGCAAGGCGCCGTCTTCGCCCCTGTCGGCTTCCCCCCCGCGCCCGGGAGCGGCGGGGGCGCCGGGGCTGATCG
CCAATGCCCTTCAGGCGTTTGACGCGGGCGCGGAGGACCGGGGTCTGTTCGTTCTTGACGCCGCAGGGGGATCGCCGGCC
GGATCGCCGCCCCCTTCGGCGGCGCTGGTGGCCGAGCTTTGGGCGCTCGCCCGCGGGGGCGGCGGATATCTGGGAAGCGG
CGAGGGCGCGGCGCGGCGGATTTATTACGTCGAGGCCTTCGCCCCCTTTGAGTGGGTTATCGGCTCATGGCGGTTGGTCG
AGGCCGGAGAGGCGGCGCTTCAGCGCGCCGCGCTGGAAACCCTGGCCGCGGAAAATGGCGGGGTTGGCGATATTTTCGTC
GGCACCTGGGAAGGGGTGGCCCTGCTTGGTCCGGGGCAGGGCCGCGATCAGCGCGAGCTGACCGATAGCGACGGGGTCAA
GCCAGTGGCGCTGCTGATCGATCAGGCGCGCAGCGGTCGCCCGGGGTTCGTCGAGTATCGGGCGCCCTACGGCTCCCGGG
TCAATGCCCGGAAACTCTCGTATGTGGCGGCGATCGCCGATTGGCGATGGTATGTCGGCACCGGGGTGATGCTTGATGAT
ATCGACGCCCTGGCTAATAACCGGCTTGGCGTGATGCGCACGGCCCTGGCCTGGGAGGTTCTGGGCGGCATCGCCTTGAT
CGGCCTGGCCGGGCTGACGATCACCTGGGGCTTGCTGCGGGTGCGTCGCCGCCTGGAAGCCAGCCACCGCCGCTTTCTGG
CGTTTCTTGACGAGGCTGCCCAGGGCCGGGGAGAGATCGATCCGGCCGCCATGGAGTTCCTGGAATACCGCGATCTCGCC
GCCTCGGCCAACCGCATGGTCGAACAACGCCGCGACGCCTTGAGCCGGCTGGCCGAACGCGGGGTCGAGCTTCAGCGCTC
CAACCGCGAACTCGAGCGCTTCGCCTTCATCGCCTCGCACGACCTGCAAGAACCCCTGCGATCGATCGCCGGCTTCATCC
AACTGATCGAACGCCGCCTGGGGCCCGATATCGATCCCGAGGTTGCCGAGTTCTTTTCCTTCGTGGTTGGCGGCGCCGGG
CGGATGCGCGACCAGATCGAGGGGCTTTTGGAATACTCGCGCCTTGATCGCGCGCAATTGGAGCGGACGGTGGTGGTGCT
TGACGAGGTGGTGGCCGAGGTTATCGCCGAGCTTGAACCCCAAATCGCGGCGGCGGGGGCCTGTGTGCGGGTGGAGGTGC
TGCCGGTGGTCTCGGCCGACCGCGGCCAATTGCGGCTTTTGTTCACCCATCTTCTCGACAACGCCCTGAAATTCCGCAAC
CCCGATCGCCCCCCCGAACTGCGGATTTCGGCTTTGCGCGACGTCGATGGCTGTTGGCGGATCAGCGTTGGCGACAACGG
CATCGGCATCGCCGAGGCCTACCATGCCCAGGTCTTCGATCTGTTCCGTCGTCTCCATAGCGCCGGCACCTATGCCGGGA
CCGGCCTGGGTTTGGCCGTCTGTCGGCGCATCGTCGAGCGCCATGGCGGCGATATCCGGCTGCGGTCGGTTCCGGGCCGG
GGAACCACCGTATCTTTCACACTGATGGCCCCCGCCGACGGCCCCCACGCCGCCGGCTGGAACCGCGCCCATTGA

Upstream 100 bases:

>100_bases
AGACGAATTTTCTGGTGCCGGCCTTTTGAGATAGCATGGGCGGGAAAAACGCGTGGTGGCGGGATCGCGGGGATCCGACG
GGCCGCGTTGGGGTATTTGA

Downstream 100 bases:

>100_bases
CAGCGGCAAGGCGCCTTTGAGTGATGAGGACTGGTCAAGGACCGGCCGGGCGGGTATCAGAAATGGCTTTGCCACACCTG
CTTATGGGACCAGACCGTGG

Product: periplasmic sensor Signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 664; Mature: 664

Protein sequence:

>664_residues
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISADILRSSLLIERQQALRGTVERALRVVGGLR
AQAERERLDALKAEVIQARSLANHLLNRYGKAPSSPLSASPPRPGAAGAPGLIANALQAFDAGAEDRGLFVLDAAGGSPA
GSPPPSAALVAELWALARGGGGYLGSGEGAARRIYYVEAFAPFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFV
GTWEGVALLGPGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLSYVAAIADWRWYVGTGVMLDD
IDALANNRLGVMRTALAWEVLGGIALIGLAGLTITWGLLRVRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLA
ASANRMVEQRRDALSRLAERGVELQRSNRELERFAFIASHDLQEPLRSIAGFIQLIERRLGPDIDPEVAEFFSFVVGGAG
RMRDQIEGLLEYSRLDRAQLERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSADRGQLRLLFTHLLDNALKFRN
PDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFDLFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGR
GTTVSFTLMAPADGPHAAGWNRAH

Sequences:

>Translated_664_residues
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISADILRSSLLIERQQALRGTVERALRVVGGLR
AQAERERLDALKAEVIQARSLANHLLNRYGKAPSSPLSASPPRPGAAGAPGLIANALQAFDAGAEDRGLFVLDAAGGSPA
GSPPPSAALVAELWALARGGGGYLGSGEGAARRIYYVEAFAPFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFV
GTWEGVALLGPGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLSYVAAIADWRWYVGTGVMLDD
IDALANNRLGVMRTALAWEVLGGIALIGLAGLTITWGLLRVRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLA
ASANRMVEQRRDALSRLAERGVELQRSNRELERFAFIASHDLQEPLRSIAGFIQLIERRLGPDIDPEVAEFFSFVVGGAG
RMRDQIEGLLEYSRLDRAQLERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSADRGQLRLLFTHLLDNALKFRN
PDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFDLFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGR
GTTVSFTLMAPADGPHAAGWNRAH
>Mature_664_residues
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISADILRSSLLIERQQALRGTVERALRVVGGLR
AQAERERLDALKAEVIQARSLANHLLNRYGKAPSSPLSASPPRPGAAGAPGLIANALQAFDAGAEDRGLFVLDAAGGSPA
GSPPPSAALVAELWALARGGGGYLGSGEGAARRIYYVEAFAPFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFV
GTWEGVALLGPGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLSYVAAIADWRWYVGTGVMLDD
IDALANNRLGVMRTALAWEVLGGIALIGLAGLTITWGLLRVRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLA
ASANRMVEQRRDALSRLAERGVELQRSNRELERFAFIASHDLQEPLRSIAGFIQLIERRLGPDIDPEVAEFFSFVVGGAG
RMRDQIEGLLEYSRLDRAQLERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSADRGQLRLLFTHLLDNALKFRN
PDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFDLFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGR
GTTVSFTLMAPADGPHAAGWNRAH

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=244, Percent_Identity=31.1475409836066, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1789149, Length=309, Percent_Identity=26.537216828479, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=238, Percent_Identity=26.0504201680672, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786912, Length=248, Percent_Identity=30.241935483871, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693157, Length=257, Percent_Identity=26.4591439688716, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788713, Length=259, Percent_Identity=22.7799227799228, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790861, Length=256, Percent_Identity=26.953125, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 71848; Mature: 71848

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISADILRSSLLIE
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RQQALRGTVERALRVVGGLRAQAERERLDALKAEVIQARSLANHLLNRYGKAPSSPLSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPRPGAAGAPGLIANALQAFDAGAEDRGLFVLDAAGGSPAGSPPPSAALVAELWALARGG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
GGYLGSGEGAARRIYYVEAFAPFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFV
CCCCCCCCCCEEEEEEEEEECCHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEE
GTWEGVALLGPGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLS
ECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
YVAAIADWRWYVGTGVMLDDIDALANNRLGVMRTALAWEVLGGIALIGLAGLTITWGLLR
HHHHHHHCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLAASANRMVEQRRDALSRLAER
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVELQRSNRELERFAFIASHDLQEPLRSIAGFIQLIERRLGPDIDPEVAEFFSFVVGGAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCH
RMRDQIEGLLEYSRLDRAQLERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEEEECCC
RGQLRLLFTHLLDNALKFRNPDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFD
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
LFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGRGTTVSFTLMAPADGPHAAGW
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCC
NRAH
CCCC
>Mature Secondary Structure
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISADILRSSLLIE
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RQQALRGTVERALRVVGGLRAQAERERLDALKAEVIQARSLANHLLNRYGKAPSSPLSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PPRPGAAGAPGLIANALQAFDAGAEDRGLFVLDAAGGSPAGSPPPSAALVAELWALARGG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
GGYLGSGEGAARRIYYVEAFAPFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFV
CCCCCCCCCCEEEEEEEEEECCHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEE
GTWEGVALLGPGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLS
ECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
YVAAIADWRWYVGTGVMLDDIDALANNRLGVMRTALAWEVLGGIALIGLAGLTITWGLLR
HHHHHHHCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLAASANRMVEQRRDALSRLAER
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVELQRSNRELERFAFIASHDLQEPLRSIAGFIQLIERRLGPDIDPEVAEFFSFVVGGAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCH
RMRDQIEGLLEYSRLDRAQLERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEEEECCC
RGQLRLLFTHLLDNALKFRNPDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFD
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
LFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGRGTTVSFTLMAPADGPHAAGW
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCC
NRAH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]