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The map label for this gene is sufD [C]

Identifier: 83593903

GI number: 83593903

Start: 2989976

End: 2991319

Strand: Reverse

Name: sufD [C]

Synonym: Rru_A2571

Alternate gene names: 83593903

Gene position: 2991319-2989976 (Counterclockwise)

Preceding gene: 83593904

Following gene: 83593902

Centisome position: 68.72

GC content: 67.63

Gene sequence:

>1344_bases
ATGACATTGCCCCAAACCCAGCCCTTCCTCGATACCCTGGCGCCCGCGTCTTACGCGGACGGGGGGGATGGCGACGGGAA
ACCCGGCTGGCTTGACGATCTGCGTCAGGCCGGTCTGGACATCTACCGGCGCCAGGGGCTGCCCACGCCGCGGGTGGAGG
CCTGGAAGTACACCAATCTGGGTGGGCTGACCAAGATCGCCTTCAAGCCCGAGCCGGCGCCGGTGACCCTGGATCCCGGG
CGTCTGCCGCTTGATCGCGTTCTGGCGCTTGACGCCCACAAGCTGGTCTTCGTCAACGGCCGGCTTGATCGGACGCTCTC
GGACGCGGGGGATCTTCCGGCCGGGCTGCGGGTCAGCGGCCTTGCCGCGCTGCTGGCCGAGGATCCGGCGCGGATCGAAC
CGCTGCTGGGCAAGGGCGCGGCCCTTGACGATCTGCCGCTGGCCGCGCTCAACACTGGCATGATCGCCGATGGCATGGTG
ATCGAGGTCGCCGAGGATGCGGTGATCGAGCGGCCGCTGCATGTGATCGCCGTTTCGGCGGCGCTTGACGGCCCAATGGT
GTTCTATCCGCGCCTGCTGGTGGTGGTCGGCGCCCGCGCCCGTCTGGTTCTGGCCGAAAGCCATGTCGGCCTGCCCGATC
ATCCGGCCTTTTCCAATGGGGTCAGCGAGATCTCGTTGGGCGAGGGCGCCCAGTTGTCCCATTACCGCCTGATCGACGGC
GCCGCCGATGGCTATCTGGTTGGCACCACCCTGGTCGAGGTCGGGGTGCGGGCCGGTTATGAAAGTTTCACCCTGGAACT
GGGCGGCCGGCTGACCCGCAATGAAATCCGCGTCACCCTGGCCGGCGAAGAGGGGCAGGCTCGGGTCAGCGGCGGTTATG
CGGTGCGCGCCGGCCAGCATCTCGACAATACGGTGCTGATTGACCATGCCCAACCGGGCGCCACCTCGCGCCAGTTGTTC
AAGGGCGTGCTCGACGAGACCGGCAAGGCGGTGTTCCAGGGCAAGATCCTGGTGCGGCGCGGCGCCCAGAAGACCGATGG
CCAGCAATTGCACAAGGCCTTGTTGCTGTCGCGCGGCGCCGAGGTCGATACCAAGCCCGAGCTTGAGATCTATGCCGACG
ACGTGGTCTGTGGCCACGGCGCCACCGCCGGCGAAATGGACGCCGACCAGCTTTTCTATCTTCAGGCGCGAGGCCTGGAC
GAGGCGACCGCCCGCGCCCTGCTGGTGGAAGCCTTTCTGGAAGACGTCGTCGGCGAAGTCGGCGATCTGCCGGTGCGCGC
GGCGATGATCGCCAAGGTGCGCGATTGGCAGCGCGCCCGTGACGGCGCGGTGTGGAGCGAGTAG

Upstream 100 bases:

>100_bases
TGGAACTTGAGGAAAAGGGTTACGCCGAATTCGTCGCCCGGGCCGCCTGAGGGGGACCGTGCTCCCGCCCCAGACCGCCA
AGACCCAAGGACGCGCACCG

Downstream 100 bases:

>100_bases
GGGGAACGCGATGATGGCGAGCAGCACGGCGGCGCGCGAGCCGCACCCAGGCGACGACAGCCCTTATGACGTGGAGGCGA
TCCGCGCCGATTTTCCAATC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MTLPQTQPFLDTLAPASYADGGDGDGKPGWLDDLRQAGLDIYRRQGLPTPRVEAWKYTNLGGLTKIAFKPEPAPVTLDPG
RLPLDRVLALDAHKLVFVNGRLDRTLSDAGDLPAGLRVSGLAALLAEDPARIEPLLGKGAALDDLPLAALNTGMIADGMV
IEVAEDAVIERPLHVIAVSAALDGPMVFYPRLLVVVGARARLVLAESHVGLPDHPAFSNGVSEISLGEGAQLSHYRLIDG
AADGYLVGTTLVEVGVRAGYESFTLELGGRLTRNEIRVTLAGEEGQARVSGGYAVRAGQHLDNTVLIDHAQPGATSRQLF
KGVLDETGKAVFQGKILVRRGAQKTDGQQLHKALLLSRGAEVDTKPELEIYADDVVCGHGATAGEMDADQLFYLQARGLD
EATARALLVEAFLEDVVGEVGDLPVRAAMIAKVRDWQRARDGAVWSE

Sequences:

>Translated_447_residues
MTLPQTQPFLDTLAPASYADGGDGDGKPGWLDDLRQAGLDIYRRQGLPTPRVEAWKYTNLGGLTKIAFKPEPAPVTLDPG
RLPLDRVLALDAHKLVFVNGRLDRTLSDAGDLPAGLRVSGLAALLAEDPARIEPLLGKGAALDDLPLAALNTGMIADGMV
IEVAEDAVIERPLHVIAVSAALDGPMVFYPRLLVVVGARARLVLAESHVGLPDHPAFSNGVSEISLGEGAQLSHYRLIDG
AADGYLVGTTLVEVGVRAGYESFTLELGGRLTRNEIRVTLAGEEGQARVSGGYAVRAGQHLDNTVLIDHAQPGATSRQLF
KGVLDETGKAVFQGKILVRRGAQKTDGQQLHKALLLSRGAEVDTKPELEIYADDVVCGHGATAGEMDADQLFYLQARGLD
EATARALLVEAFLEDVVGEVGDLPVRAAMIAKVRDWQRARDGAVWSE
>Mature_446_residues
TLPQTQPFLDTLAPASYADGGDGDGKPGWLDDLRQAGLDIYRRQGLPTPRVEAWKYTNLGGLTKIAFKPEPAPVTLDPGR
LPLDRVLALDAHKLVFVNGRLDRTLSDAGDLPAGLRVSGLAALLAEDPARIEPLLGKGAALDDLPLAALNTGMIADGMVI
EVAEDAVIERPLHVIAVSAALDGPMVFYPRLLVVVGARARLVLAESHVGLPDHPAFSNGVSEISLGEGAQLSHYRLIDGA
ADGYLVGTTLVEVGVRAGYESFTLELGGRLTRNEIRVTLAGEEGQARVSGGYAVRAGQHLDNTVLIDHAQPGATSRQLFK
GVLDETGKAVFQGKILVRRGAQKTDGQQLHKALLLSRGAEVDTKPELEIYADDVVCGHGATAGEMDADQLFYLQARGLDE
ATARALLVEAFLEDVVGEVGDLPVRAAMIAKVRDWQRARDGAVWSE

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=398, Percent_Identity=30.9045226130653, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47568; Mature: 47437

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPQTQPFLDTLAPASYADGGDGDGKPGWLDDLRQAGLDIYRRQGLPTPRVEAWKYTNL
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
GGLTKIAFKPEPAPVTLDPGRLPLDRVLALDAHKLVFVNGRLDRTLSDAGDLPAGLRVSG
CCEEEEEECCCCCCEEECCCCCCHHHHHEECCCEEEEECCCCCCHHHHCCCCCCCCCHHH
LAALLAEDPARIEPLLGKGAALDDLPLAALNTGMIADGMVIEVAEDAVIERPLHVIAVSA
HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHCCEEEEEEEC
ALDGPMVFYPRLLVVVGARARLVLAESHVGLPDHPAFSNGVSEISLGEGAQLSHYRLIDG
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECC
AADGYLVGTTLVEVGVRAGYESFTLELGGRLTRNEIRVTLAGEEGQARVSGGYAVRAGQH
CCCCEEHHHHHHHHHHHCCCCEEEEECCCEEECCEEEEEEECCCCCEEECCCEEEECCCC
LDNTVLIDHAQPGATSRQLFKGVLDETGKAVFQGKILVRRGAQKTDGQQLHKALLLSRGA
CCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCC
EVDTKPELEIYADDVVCGHGATAGEMDADQLFYLQARGLDEATARALLVEAFLEDVVGEV
CCCCCCCEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
GDLPVRAAMIAKVRDWQRARDGAVWSE
CCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLPQTQPFLDTLAPASYADGGDGDGKPGWLDDLRQAGLDIYRRQGLPTPRVEAWKYTNL
CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC
GGLTKIAFKPEPAPVTLDPGRLPLDRVLALDAHKLVFVNGRLDRTLSDAGDLPAGLRVSG
CCEEEEEECCCCCCEEECCCCCCHHHHHEECCCEEEEECCCCCCHHHHCCCCCCCCCHHH
LAALLAEDPARIEPLLGKGAALDDLPLAALNTGMIADGMVIEVAEDAVIERPLHVIAVSA
HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHCCEEEEEEEC
ALDGPMVFYPRLLVVVGARARLVLAESHVGLPDHPAFSNGVSEISLGEGAQLSHYRLIDG
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECC
AADGYLVGTTLVEVGVRAGYESFTLELGGRLTRNEIRVTLAGEEGQARVSGGYAVRAGQH
CCCCEEHHHHHHHHHHHCCCCEEEEECCCEEECCEEEEEEECCCCCEEECCCEEEECCCC
LDNTVLIDHAQPGATSRQLFKGVLDETGKAVFQGKILVRRGAQKTDGQQLHKALLLSRGA
CCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCC
EVDTKPELEIYADDVVCGHGATAGEMDADQLFYLQARGLDEATARALLVEAFLEDVVGEV
CCCCCCCEEEEECCEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
GDLPVRAAMIAKVRDWQRARDGAVWSE
CCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]