| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is epsE [H]
Identifier: 83593830
GI number: 83593830
Start: 2901242
End: 2902219
Strand: Reverse
Name: epsE [H]
Synonym: Rru_A2495
Alternate gene names: 83593830
Gene position: 2902219-2901242 (Counterclockwise)
Preceding gene: 83593831
Following gene: 83593829
Centisome position: 66.67
GC content: 70.04
Gene sequence:
>978_bases TTGACGGCGGGCGGTCCCCTGATCACTGCGGCCTTGACCGCCTATGACGCCGAGGACACCATCGCCGGCGCCCTGGCCTC GGCCCTGGCCCAGGATTGGCCCAGCCTGGAGGTTCTGATCCTCGACGACGCCTCGCGCGATGGCACGCGCAAGGTCATCG AGGCCGTTATCACCGAACGCGGCGACCAGGGCCCGCCGATCCGCCTGATCGCCCTTGATAAAAACGGCGGCGTCGCCCAG GCGCGCAACCGCTTGCTCGCCGAAGCCAAAGGCGAGGTGATCGCCTTTTTCGATGATGACGACATCAGCGCCCCCGACCG CCTGCGCCGCCAGTACGCGCGGTTGATCGCCGCCGAGCGCGAGACCGGGGCCGGGCTGGTTTTCTGCCACGCCGCGCGGT GCCAGATCCTGCCCGACGGCGGCGAGCGCCTGGAAGGCACGATGGGTGAGGAGGGCGGGCCGATCCCCGGGGGCGACGCC GTGGTCCGGCGCATCCTTTTGGGAACCCTGAGCCCGGGGGTGCGCGGCTCTTGCGCCACCTGTTCGCAGATGGCGCGCAC CGCCAGCTATCGCGCCCTGGGCGGCTTCGATCCGACGCTGCGCCGGGCCGAGGATACGGATTTGTGCCTGCGCGCCGCTT TGGGTGGCGCGGTCTTCGCTGGCCTGTCCGCCCCCTTGGTCACCCAGCGCCTGACCCTGGGCGGCGACAAGACGCCGCGC GAGGATCATCGGGCCTATCAGGCCCTGCTTAACAAGCACCGCGCCACCCTGGCCAAGACCGGCTGGTTGACTTTTTACGC GCGCTGGCAAGATATCCGTCTGGCCCATCTCGAGGGGCGCACGGGGCGGGTTGTTCTCGGGCTGGTCGGGCTCGGCCTGA GCCATCCGCTGAAACTCGCGCGCAAGATCGTTTGGTCGCTGCCCGCCGCCGGCACCCGGGCGGCCTATCACCGCCAGCAC CGCAAGGACACGTCGTGA
Upstream 100 bases:
>100_bases TAGCGCTGTTTTTCGGGGTGCTTGGCGTGGCGCTCTGTCAGGCCACCGTTCTTGCTAGTATTTATTTCTACTGGCGTCGC GTGTTGCGGGGGTTCGTCGT
Downstream 100 bases:
>100_bases CCGCGACTTCCCCCGCCGAGGCTCTCCCTGCGCTGATCACCATCGGCCTGACCTGCTATAACGCCGCCGCCACCATCGAG CGGGCGCTCGACAGCGCCCT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MTAGGPLITAALTAYDAEDTIAGALASALAQDWPSLEVLILDDASRDGTRKVIEAVITERGDQGPPIRLIALDKNGGVAQ ARNRLLAEAKGEVIAFFDDDDISAPDRLRRQYARLIAAERETGAGLVFCHAARCQILPDGGERLEGTMGEEGGPIPGGDA VVRRILLGTLSPGVRGSCATCSQMARTASYRALGGFDPTLRRAEDTDLCLRAALGGAVFAGLSAPLVTQRLTLGGDKTPR EDHRAYQALLNKHRATLAKTGWLTFYARWQDIRLAHLEGRTGRVVLGLVGLGLSHPLKLARKIVWSLPAAGTRAAYHRQH RKDTS
Sequences:
>Translated_325_residues MTAGGPLITAALTAYDAEDTIAGALASALAQDWPSLEVLILDDASRDGTRKVIEAVITERGDQGPPIRLIALDKNGGVAQ ARNRLLAEAKGEVIAFFDDDDISAPDRLRRQYARLIAAERETGAGLVFCHAARCQILPDGGERLEGTMGEEGGPIPGGDA VVRRILLGTLSPGVRGSCATCSQMARTASYRALGGFDPTLRRAEDTDLCLRAALGGAVFAGLSAPLVTQRLTLGGDKTPR EDHRAYQALLNKHRATLAKTGWLTFYARWQDIRLAHLEGRTGRVVLGLVGLGLSHPLKLARKIVWSLPAAGTRAAYHRQH RKDTS >Mature_324_residues TAGGPLITAALTAYDAEDTIAGALASALAQDWPSLEVLILDDASRDGTRKVIEAVITERGDQGPPIRLIALDKNGGVAQA RNRLLAEAKGEVIAFFDDDDISAPDRLRRQYARLIAAERETGAGLVFCHAARCQILPDGGERLEGTMGEEGGPIPGGDAV VRRILLGTLSPGVRGSCATCSQMARTASYRALGGFDPTLRRAEDTDLCLRAALGGAVFAGLSAPLVTQRLTLGGDKTPRE DHRAYQALLNKHRATLAKTGWLTFYARWQDIRLAHLEGRTGRVVLGLVGLGLSHPLKLARKIVWSLPAAGTRAAYHRQHR KDTS
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 34742; Mature: 34611
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGGPLITAALTAYDAEDTIAGALASALAQDWPSLEVLILDDASRDGTRKVIEAVITER CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC GDQGPPIRLIALDKNGGVAQARNRLLAEAKGEVIAFFDDDDISAPDRLRRQYARLIAAER CCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC ETGAGLVFCHAARCQILPDGGERLEGTMGEEGGPIPGGDAVVRRILLGTLSPGVRGSCAT CCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH CSQMARTASYRALGGFDPTLRRAEDTDLCLRAALGGAVFAGLSAPLVTQRLTLGGDKTPR HHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH EDHRAYQALLNKHRATLAKTGWLTFYARWQDIRLAHLEGRTGRVVLGLVGLGLSHPLKLA HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEEEEEHHCCCCCHHHHH RKIVWSLPAAGTRAAYHRQHRKDTS HHHHHHCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TAGGPLITAALTAYDAEDTIAGALASALAQDWPSLEVLILDDASRDGTRKVIEAVITER CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC GDQGPPIRLIALDKNGGVAQARNRLLAEAKGEVIAFFDDDDISAPDRLRRQYARLIAAER CCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC ETGAGLVFCHAARCQILPDGGERLEGTMGEEGGPIPGGDAVVRRILLGTLSPGVRGSCAT CCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH CSQMARTASYRALGGFDPTLRRAEDTDLCLRAALGGAVFAGLSAPLVTQRLTLGGDKTPR HHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH EDHRAYQALLNKHRATLAKTGWLTFYARWQDIRLAHLEGRTGRVVLGLVGLGLSHPLKLA HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEEEEEHHCCCCCHHHHH RKIVWSLPAAGTRAAYHRQHRKDTS HHHHHHCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]