| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is hsdBM [H]
Identifier: 83593823
GI number: 83593823
Start: 2892239
End: 2894053
Strand: Reverse
Name: hsdBM [H]
Synonym: Rru_A2488
Alternate gene names: 83593823
Gene position: 2894053-2892239 (Counterclockwise)
Preceding gene: 83593825
Following gene: 83593822
Centisome position: 66.49
GC content: 71.52
Gene sequence:
>1815_bases GTGACGCCGTGCGGGACCGCTTCCACGTCCCCGGAAAAATCCGCCGCGATCCTGGCCGGGCCGCCGTCGCCCGGGGTCGA GGGGACGCGGTCCGATTTGGCGCGCGCCCGCGTCGTCGCCCGGGCCTGGGCTGAAACCCTGACGCCGGCGCGGCGCGCCG ATCAGGCCTTGCTGTTCACCACCGCCGCGATGGCGGCCCTGCGCAAGGGGATCGGCGTCGAGGCTGTTGCCCGCCCCGGT TTCGCCCGACCGCGCGGCCGCCTCGATCACGCCGGCGCCCGGGTGGCCCAGGCGATCGGCGAGGACGCCGCCCTGCTGCC TTTGGCCGAGGCGCTGCATCTGATCACCGGCCTCTATCCGGCGCTGTTGCCCGCCCGCGAGCGCGGCGCCCTGGGCGCCT TTTACACGCCGATCGCCCTGGTCGAGCGCCTGCTTGATCGCGCGACCGAGGAGGGCGCCGATTGGGCCGGGCTGCGTTTG CTTGATCCGGCCGCCGGTGGCGGGGCCTTTCTGCTGGGCGCCGTCGCCCGCATCCGCGCCGCCTTGGCCGGCTGCGAACC GGCCTTCATCCTGGGGCGGATCGGCGCCCGGGTGCTGGGGCTCGAGGTCGATGCGAGGGCGGCCGCCCTGGCCCAGGCCG CGCTCGATATTCTTCTGGCCGATCTGGCCCAAGCCGCCGGACGGCCGCCGCCGGTGGTGTTGCGGGTGGCCGATACCCTG GAAATCCCCGCCGATCCCAGCTTCGATCTGGTGGTCGGCAATCCGCCCTATGGACGGGTCGGCCTGACCCCGGCCCAGCG CGCCCGCTTTGGTCGCGGGCTGTATGGCCATGCCAATCTGTATGGGGTGTTCACCGATATCGCCCTGCGCTGGACGGCGC CGGGCGGGCTGATCGCCTATCTCACCCCCACCAGTTTTCTGGCCGGGCGCTACTATGGCGCCTTGCGCGGACTGCTGGCG GCGGAAGCGCCGCCGCTGTCGATCGATTTCGTCCATGCCCGCCAGGGGGTGTTCGAGGATGTTTTGCAAGAAACCCTGCT GGCGCTTTATCGCCGTGGCGGGCAAGCCGGGCGGGTGCGCATTCATTATCTGACCCTGGACGGCGAGGGGCGGGCGCGGA TCGCCCATAATGGCACCATTGGCCTGCCCGCCGATGCCGGCGCCCCCTGGCTGGCGCCGCGCGATCCCGGCCAGGGGCAC CTAGTCGCCCGGGTCGAGGCCATGGGCCATCGACTGGCCGAGTGGGGCTATGGGGTGTCGACCGGGCCTTTGGTGTGGAA CCGCTATAAGGGCCAGCTCCGCGACCGGCCGACGGGCAAGCGGGTTCATCCGCTGATCTGGGCCGAGGCGGTCACGGCGG ACGGCCGCTTTGTTTTCCGCGCCGCCAAACGCAACCATGCGCCCTATTTCAAGCTGCAGGCCGGCGATGACGCGCTTCTG GTCGGCGAGCCCTGCGTGCTGGTCCAGCGCACCACCGCCAAGGAACAGCACCGCCGGCTGATCGCCGCCGAACTGCCCGC GGCTTTTGTCGCCGGCCATGGCGGGGTGGTGGTGGAGAACCATCTGAACATGGTGCGCGCCAAGGGCACCCCCCGGGTGG CGCCGGCGGTGGTGGCGGCCCTGCTCAACAGCGCCGTTGTCGATCAGGTGTTTCGCTGCATGAGCGGTAGCGTCGCCGTA TCGGCCTTTGAACTGGAAGCCCTGCCGCTGCCCGCCGCCGGCGATCTGGGGCCGCTGACGGCCCTGGTGGCCGCCGGCGC CCCGCGCGATGACATCGAAGCCGAATGCGCCCGGCTCTATGGGAAGGGGCTTTGA
Upstream 100 bases:
>100_bases ATGGATACTGGTGGCGGATCGCGGGCGGCGCTTGTAGCCTGCGGGCCCGGCTGGCGGCCGGGCTGGCAACGGGGTGGGGA CTGGCTTGGGAGATGACGTC
Downstream 100 bases:
>100_bases CCATGGATCTGTTCTCGCGGCTCGAGGGCGCCAAGGAACCCAAGGAGACTAAGGAGACCAAGGAGGCCAAGGAACCCAAG GAACCCAAGGAACCCAAGGA
Product: putative RNA methylase
Products: NA
Alternate protein names: M.BsuBI; Adenine-specific methyltransferase BsuBI [H]
Number of amino acids: Translated: 604; Mature: 603
Protein sequence:
>604_residues MTPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPARRADQALLFTTAAMAALRKGIGVEAVARPG FARPRGRLDHAGARVAQAIGEDAALLPLAEALHLITGLYPALLPARERGALGAFYTPIALVERLLDRATEEGADWAGLRL LDPAAGGGAFLLGAVARIRAALAGCEPAFILGRIGARVLGLEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTL EIPADPSFDLVVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAYLTPTSFLAGRYYGALRGLLA AEAPPLSIDFVHARQGVFEDVLQETLLALYRRGGQAGRVRIHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGH LVARVEAMGHRLAEWGYGVSTGPLVWNRYKGQLRDRPTGKRVHPLIWAEAVTADGRFVFRAAKRNHAPYFKLQAGDDALL VGEPCVLVQRTTAKEQHRRLIAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAALLNSAVVDQVFRCMSGSVAV SAFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLYGKGL
Sequences:
>Translated_604_residues MTPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPARRADQALLFTTAAMAALRKGIGVEAVARPG FARPRGRLDHAGARVAQAIGEDAALLPLAEALHLITGLYPALLPARERGALGAFYTPIALVERLLDRATEEGADWAGLRL LDPAAGGGAFLLGAVARIRAALAGCEPAFILGRIGARVLGLEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTL EIPADPSFDLVVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAYLTPTSFLAGRYYGALRGLLA AEAPPLSIDFVHARQGVFEDVLQETLLALYRRGGQAGRVRIHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGH LVARVEAMGHRLAEWGYGVSTGPLVWNRYKGQLRDRPTGKRVHPLIWAEAVTADGRFVFRAAKRNHAPYFKLQAGDDALL VGEPCVLVQRTTAKEQHRRLIAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAALLNSAVVDQVFRCMSGSVAV SAFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLYGKGL >Mature_603_residues TPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPARRADQALLFTTAAMAALRKGIGVEAVARPGF ARPRGRLDHAGARVAQAIGEDAALLPLAEALHLITGLYPALLPARERGALGAFYTPIALVERLLDRATEEGADWAGLRLL DPAAGGGAFLLGAVARIRAALAGCEPAFILGRIGARVLGLEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTLE IPADPSFDLVVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAYLTPTSFLAGRYYGALRGLLAA EAPPLSIDFVHARQGVFEDVLQETLLALYRRGGQAGRVRIHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGHL VARVEAMGHRLAEWGYGVSTGPLVWNRYKGQLRDRPTGKRVHPLIWAEAVTADGRFVFRAAKRNHAPYFKLQAGDDALLV GEPCVLVQRTTAKEQHRRLIAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAALLNSAVVDQVFRCMSGSVAVS AFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLYGKGL
Specific function: This methylase recognizes the double-stranded sequence CTGCAG, causes specific methylation on A-5 on both strand, and protects the DNA from cleavage by the BsuBI endonuclease [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR011639 [H]
Pfam domain/function: PF07669 Eco57I [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 63384; Mature: 63253
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPARRADQALLFT CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHH TAAMAALRKGIGVEAVARPGFARPRGRLDHAGARVAQAIGEDAALLPLAEALHLITGLYP HHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ALLPARERGALGAFYTPIALVERLLDRATEEGADWAGLRLLDPAAGGGAFLLGAVARIRA HHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH ALAGCEPAFILGRIGARVLGLEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTL HHHCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCE EIPADPSFDLVVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAY ECCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCHHEEEEEEEEEEEECCCCEEEE LTPTSFLAGRYYGALRGLLAAEAPPLSIDFVHARQGVFEDVLQETLLALYRRGGQAGRVR ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE IHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGHLVARVEAMGHRLAEWGYGVS EEEEEECCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC TGPLVWNRYKGQLRDRPTGKRVHPLIWAEAVTADGRFVFRAAKRNHAPYFKLQAGDDALL CCCEEEECCCCCCCCCCCCCCCCCEEEEHEECCCCEEEEEEHHCCCCCEEEEECCCCEEE VGEPCVLVQRTTAKEQHRRLIAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAA ECCCEEEEEECHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCHHEECCCCCCHHHHHHHH LLNSAVVDQVFRCMSGSVAVSAFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLY HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH GKGL CCCC >Mature Secondary Structure TPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPARRADQALLFT CCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHH TAAMAALRKGIGVEAVARPGFARPRGRLDHAGARVAQAIGEDAALLPLAEALHLITGLYP HHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH ALLPARERGALGAFYTPIALVERLLDRATEEGADWAGLRLLDPAAGGGAFLLGAVARIRA HHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH ALAGCEPAFILGRIGARVLGLEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTL HHHCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCE EIPADPSFDLVVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAY ECCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCHHEEEEEEEEEEEECCCCEEEE LTPTSFLAGRYYGALRGLLAAEAPPLSIDFVHARQGVFEDVLQETLLALYRRGGQAGRVR ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE IHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGHLVARVEAMGHRLAEWGYGVS EEEEEECCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC TGPLVWNRYKGQLRDRPTGKRVHPLIWAEAVTADGRFVFRAAKRNHAPYFKLQAGDDALL CCCEEEECCCCCCCCCCCCCCCCCEEEEHEECCCCEEEEEEHHCCCCCEEEEECCCCEEE VGEPCVLVQRTTAKEQHRRLIAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAA ECCCEEEEEECHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCHHEECCCCCCHHHHHHHH LLNSAVVDQVFRCMSGSVAVSAFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLY HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH GKGL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1480472 [H]