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The map label for this gene is ybdL [C]

Identifier: 83593758

GI number: 83593758

Start: 2822725

End: 2823912

Strand: Reverse

Name: ybdL [C]

Synonym: Rru_A2423

Alternate gene names: 83593758

Gene position: 2823912-2822725 (Counterclockwise)

Preceding gene: 83593759

Following gene: 83593756

Centisome position: 64.88

GC content: 67.59

Gene sequence:

>1188_bases
ATGGCCCTCTTTTGCGTGGAATGTGGTTCGATGGCTTTGAAAGTGGCCCGGCGGGGCCTTATTCCGCCGTTTATCGTGAT
GGACGTGATGCGCGCGGCGGCGGAGCGCGAGGCCACCGGCGCCGAGGTCATGCACCTCGAGGTCGGCCAGCCGTCCACCG
GTCTGCCCGAGCAGGCGCTTGACGAGGTGGCGCGGCGCCTGCACAGCGGGCCGATGGGCTATACGGTGGCCCTTGGCCTG
GATGCCCTGCGCGAGGCCATCGCCTTGCATTACCAGCGCACCCAGGGGGTGGCTGTCGATCCCGGCCGCATCATCGTGAC
CACCGGATCCTCGGCGGGCTTCATCCTGGCCTTCCTCGCCGCTTTCGAGGCCGGCGACCGCGTGGGGCTGGCCGCGCCCG
GCTATCCGGCCTATCGCCATATCCTCAAGGCCCTGGGCTGCGAGCCGGTGATCTTGCCGACCGGCCCGGAAACCCGCTAC
CAGCCGACGGTGGCGGTGCTGGAAGAGGCCGGGATGGATCTGGACGGGTTGATCGTCGCCAGTCCGGCCAATCCGACCGG
CACGGTGATGCCCGCCGCCGACCTCAAGGCCCTGGTCGCTTATTGCGGCGAGCGGGGGATCCGCCTGATCTCCGACGAGA
TCTATCACGGCATCACCTATGGCGAGGCGGCGTTAAGCACGGTCGGGCTTGCCGAGCATCCGGTGGTGGTCAACAGCTTT
TCCAAATACTTCTGCATGACCGGCTGGCGCCTGGGCTGGCTGGTGCTGCCCCCCGACCTGCTGCGCCCGGTGGAATGCCT
GACCCAGAACCTGTTCATCAGCCCGCCGGCCCTGTCGCAATACGCCGGGCTGGCCGCCTTGCGCCATCATGGGGCCTTTG
AAGAGAACATCCGCCGCTATGCCCGCAATCGCCAGATCCTGCTTGATGCCCTGCCGGCGGCGGGCTTCGGCGCCTTCGCC
CCCGCCGATGGCGCGTTCTATCTGTATGGCGATGTCAGCGGCCTGACCGACGACAGTCTGGGGTTCTGCGCCCGCATGCT
GGCCGAAACCGGCGTCGCCGCCACCCCCGGCCTTGATTTCGACGACGCCCGCGGCGCCCATTTTGTCCGCTTCAGCTTCA
GCGGCGCGACGGAAACCATCGAAAAGGCCGCCCGTCGTCTGCTGGAATGGAAAGGCGGTCGCGGATAG

Upstream 100 bases:

>100_bases
ACCGGCCTCGTGCCGGGCGGCGACCGATCCCCGGGGGGCTGGCTATGCCCTGAGGGCGGGCAGCTAAAAGCACCCTGGGT
TCCCTTTTGCCTTTTTTTGC

Downstream 100 bases:

>100_bases
GGGGGAGGAGAGGCCTGGAATAGCGTTCTAGGACGATATTCCAGGCTGGCGGTGCTACTGCCCGGCCGGCAACGGGTCGC
CGTCGGGGTGTTCTTCGAAG

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MALFCVECGSMALKVARRGLIPPFIVMDVMRAAAEREATGAEVMHLEVGQPSTGLPEQALDEVARRLHSGPMGYTVALGL
DALREAIALHYQRTQGVAVDPGRIIVTTGSSAGFILAFLAAFEAGDRVGLAAPGYPAYRHILKALGCEPVILPTGPETRY
QPTVAVLEEAGMDLDGLIVASPANPTGTVMPAADLKALVAYCGERGIRLISDEIYHGITYGEAALSTVGLAEHPVVVNSF
SKYFCMTGWRLGWLVLPPDLLRPVECLTQNLFISPPALSQYAGLAALRHHGAFEENIRRYARNRQILLDALPAAGFGAFA
PADGAFYLYGDVSGLTDDSLGFCARMLAETGVAATPGLDFDDARGAHFVRFSFSGATETIEKAARRLLEWKGGRG

Sequences:

>Translated_395_residues
MALFCVECGSMALKVARRGLIPPFIVMDVMRAAAEREATGAEVMHLEVGQPSTGLPEQALDEVARRLHSGPMGYTVALGL
DALREAIALHYQRTQGVAVDPGRIIVTTGSSAGFILAFLAAFEAGDRVGLAAPGYPAYRHILKALGCEPVILPTGPETRY
QPTVAVLEEAGMDLDGLIVASPANPTGTVMPAADLKALVAYCGERGIRLISDEIYHGITYGEAALSTVGLAEHPVVVNSF
SKYFCMTGWRLGWLVLPPDLLRPVECLTQNLFISPPALSQYAGLAALRHHGAFEENIRRYARNRQILLDALPAAGFGAFA
PADGAFYLYGDVSGLTDDSLGFCARMLAETGVAATPGLDFDDARGAHFVRFSFSGATETIEKAARRLLEWKGGRG
>Mature_394_residues
ALFCVECGSMALKVARRGLIPPFIVMDVMRAAAEREATGAEVMHLEVGQPSTGLPEQALDEVARRLHSGPMGYTVALGLD
ALREAIALHYQRTQGVAVDPGRIIVTTGSSAGFILAFLAAFEAGDRVGLAAPGYPAYRHILKALGCEPVILPTGPETRYQ
PTVAVLEEAGMDLDGLIVASPANPTGTVMPAADLKALVAYCGERGIRLISDEIYHGITYGEAALSTVGLAEHPVVVNSFS
KYFCMTGWRLGWLVLPPDLLRPVECLTQNLFISPPALSQYAGLAALRHHGAFEENIRRYARNRQILLDALPAAGFGAFAP
ADGAFYLYGDVSGLTDDSLGFCARMLAETGVAATPGLDFDDARGAHFVRFSFSGATETIEKAARRLLEWKGGRG

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=398, Percent_Identity=23.6180904522613, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI169881279, Length=398, Percent_Identity=23.6180904522613, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI56713254, Length=391, Percent_Identity=23.5294117647059, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI56713256, Length=391, Percent_Identity=23.5294117647059, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI169881281, Length=244, Percent_Identity=23.7704918032787, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI4507369, Length=400, Percent_Identity=22.5, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI4885351, Length=353, Percent_Identity=24.6458923512748, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1786816, Length=370, Percent_Identity=30, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788722, Length=387, Percent_Identity=25.3229974160207, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788627, Length=235, Percent_Identity=27.2340425531915, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790797, Length=238, Percent_Identity=26.0504201680672, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71994476, Length=363, Percent_Identity=25.3443526170799, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994472, Length=363, Percent_Identity=25.3443526170799, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17567663, Length=375, Percent_Identity=26.9333333333333, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17567369, Length=382, Percent_Identity=23.2984293193717, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322401, Length=388, Percent_Identity=23.9690721649485, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28573069, Length=387, Percent_Identity=23.7726098191214, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24646114, Length=387, Percent_Identity=23.7726098191214, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28573067, Length=387, Percent_Identity=23.7726098191214, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28573065, Length=387, Percent_Identity=23.7726098191214, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI18859735, Length=222, Percent_Identity=28.8288288288288, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42107; Mature: 41976

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFCVECGSMALKVARRGLIPPFIVMDVMRAAAEREATGAEVMHLEVGQPSTGLPEQAL
CEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
DEVARRLHSGPMGYTVALGLDALREAIALHYQRTQGVAVDPGRIIVTTGSSAGFILAFLA
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHHH
AFEAGDRVGLAAPGYPAYRHILKALGCEPVILPTGPETRYQPTVAVLEEAGMDLDGLIVA
HHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCEEEE
SPANPTGTVMPAADLKALVAYCGERGIRLISDEIYHGITYGEAALSTVGLAEHPVVVNSF
CCCCCCCCEECHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHCCCCCCCEEHHHH
SKYFCMTGWRLGWLVLPPDLLRPVECLTQNLFISPPALSQYAGLAALRHHGAFEENIRRY
HHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
ARNRQILLDALPAAGFGAFAPADGAFYLYGDVSGLTDDSLGFCARMLAETGVAATPGLDF
HCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DDARGAHFVRFSFSGATETIEKAARRLLEWKGGRG
CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALFCVECGSMALKVARRGLIPPFIVMDVMRAAAEREATGAEVMHLEVGQPSTGLPEQAL
EEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
DEVARRLHSGPMGYTVALGLDALREAIALHYQRTQGVAVDPGRIIVTTGSSAGFILAFLA
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHHH
AFEAGDRVGLAAPGYPAYRHILKALGCEPVILPTGPETRYQPTVAVLEEAGMDLDGLIVA
HHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCEEEE
SPANPTGTVMPAADLKALVAYCGERGIRLISDEIYHGITYGEAALSTVGLAEHPVVVNSF
CCCCCCCCEECHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHCCCCCCCEEHHHH
SKYFCMTGWRLGWLVLPPDLLRPVECLTQNLFISPPALSQYAGLAALRHHGAFEENIRRY
HHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
ARNRQILLDALPAAGFGAFAPADGAFYLYGDVSGLTDDSLGFCARMLAETGVAATPGLDF
HCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DDARGAHFVRFSFSGATETIEKAARRLLEWKGGRG
CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]