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The map label for this gene is cbbR [H]

Identifier: 83593736

GI number: 83593736

Start: 2796032

End: 2796979

Strand: Reverse

Name: cbbR [H]

Synonym: Rru_A2401

Alternate gene names: 83593736

Gene position: 2796979-2796032 (Counterclockwise)

Preceding gene: 83593743

Following gene: 83593735

Centisome position: 64.26

GC content: 65.93

Gene sequence:

>948_bases
ATGCGCCACGCCACCTTGCGGCAGATGCAGATTTTCGACGCCGTCGCCCGCCACCTCAGCTTCTCCAACGCCGCCCGGGA
ACTGGGGCTGACCCAGCCGGCGGTGTCGTTGCAAATCAAGCAGATCGAGGCCCTGGCCGGCTTGCCGCTGTTTGAGCAGA
TGGGTCGGGTGCTGCTGCTCACCCAGGCCGGAACCATTCTTCTCGGGCATGTGCGGACCATTCTGGCGGCGGTGACCGAT
GCCGACAAGGCGATGGACGCCCTGAAGGGCAAGCGCGCCGGGGCGTTGCGCATCGGCGTGGTCAGCACCGCCAAATACTT
CGCCCCCCGCCTGCTCTCGGTGTTCACCGCCGGCTATCCCGGTGTTGAACTGGGGCTGACGGTGGCCAATCGCGAGCAGA
TCCTGGGGATGATCCAGGAAAACGCCCTGGACCTGTTCATCATGGGCCGGCCGCCGACCGAGCCGGCGGTGCGCGCCGAA
CGCTTCGCCCCCAATCCGATGGTGATGGTCGCGGCGTCGGATCATCCGCTGGTGCGGCGCAAGCTGACGTTCCACGATCT
GTCGGGGGAAACCTTTCTGATGCGCGAGCCGGGGTCGGGCACGCGCATCCTTATGGAAAAGCTGATGACCGACCATGGGG
TGCTGCCCCACCGCATGATCGAGATGTCGAGCAATGAGACCATCAAGCAGGCGGTGATGGCCGGCATGGGCATCAGCCTG
CTGTCGCGCAACACCATGAGCCTGGAGCTTTCGGTCGGCCGGCTGGTGATCCTTGATGTGGAAGGGCTGCCGATCCAGCG
CGACTGGTATGTGGTGATCCGCGAGGGCAAGCACCTGCTGCCGGTGGCCGAGGCGATGGTGGCCTTTCTCAAGGCGCGCG
GCGAGGACCTGTTGAGCGACGCCATCCGCACCCTGCCGCCGCGCCGCAACCGTCATGTCAGCGGCTGA

Upstream 100 bases:

>100_bases
TGGAAATTCTGGCGGGACGGACACATAAACACAACAAAGTTATTATGGCATAGTCTATAAGCTAAACCTTATAGGCCAAT
CGGCAGGGGAATGATCCGCC

Downstream 100 bases:

>100_bases
AAAGCGCGGACAACGGAAAGTCGTATAATCTTTTACTTATGGGGAAGTCTAAAACAATAAATTATGGCTTATGGATCGAT
GGGGGTACAGTGCCCCCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLLTQAGTILLGHVRTILAAVTD
ADKAMDALKGKRAGALRIGVVSTAKYFAPRLLSVFTAGYPGVELGLTVANREQILGMIQENALDLFIMGRPPTEPAVRAE
RFAPNPMVMVAASDHPLVRRKLTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISL
LSRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSDAIRTLPPRRNRHVSG

Sequences:

>Translated_315_residues
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLLTQAGTILLGHVRTILAAVTD
ADKAMDALKGKRAGALRIGVVSTAKYFAPRLLSVFTAGYPGVELGLTVANREQILGMIQENALDLFIMGRPPTEPAVRAE
RFAPNPMVMVAASDHPLVRRKLTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISL
LSRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSDAIRTLPPRRNRHVSG
>Mature_315_residues
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLLTQAGTILLGHVRTILAAVTD
ADKAMDALKGKRAGALRIGVVSTAKYFAPRLLSVFTAGYPGVELGLTVANREQILGMIQENALDLFIMGRPPTEPAVRAE
RFAPNPMVMVAASDHPLVRRKLTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISL
LSRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSDAIRTLPPRRNRHVSG

Specific function: Transcriptional activator for the cbb operon for RuBisCO and other Calvin cycle genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=278, Percent_Identity=28.4172661870504, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI157672245, Length=220, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787879, Length=257, Percent_Identity=32.6848249027237, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=28.7671232876712, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789173, Length=283, Percent_Identity=29.3286219081272, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693105, Length=319, Percent_Identity=26.6457680250784, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=23.5690235690236, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=27.6264591439689, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789204, Length=259, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786401, Length=309, Percent_Identity=28.1553398058252, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788887, Length=195, Percent_Identity=31.2820512820513, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=245, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788626, Length=261, Percent_Identity=27.9693486590038, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787806, Length=292, Percent_Identity=25.3424657534247, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790208, Length=260, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=24.2798353909465, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=24.1379310344828, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=297, Percent_Identity=25.2525252525253, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34592; Mature: 34592

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEE
TQAGTILLGHVRTILAAVTDADKAMDALKGKRAGALRIGVVSTAKYFAPRLLSVFTAGYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
GVELGLTVANREQILGMIQENALDLFIMGRPPTEPAVRAERFAPNPMVMVAASDHPLVRR
CCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCHHHE
KLTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISL
EEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHCCCHHH
LSRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSD
HCCCCEEEEEEECEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
AIRTLPPRRNRHVSG
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEE
TQAGTILLGHVRTILAAVTDADKAMDALKGKRAGALRIGVVSTAKYFAPRLLSVFTAGYP
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
GVELGLTVANREQILGMIQENALDLFIMGRPPTEPAVRAERFAPNPMVMVAASDHPLVRR
CCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCHHHE
KLTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISL
EEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHCCCHHH
LSRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSD
HCCCCEEEEEEECEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
AIRTLPPRRNRHVSG
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8349547 [H]