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The map label for this gene is fecI [C]

Identifier: 83593732

GI number: 83593732

Start: 2788224

End: 2788763

Strand: Reverse

Name: fecI [C]

Synonym: Rru_A2397

Alternate gene names: 83593732

Gene position: 2788763-2788224 (Counterclockwise)

Preceding gene: 83593735

Following gene: 83593731

Centisome position: 64.07

GC content: 64.44

Gene sequence:

>540_bases
GTGACGGATGTGAAAGACTCCCTTGATCTGTTCCTTCGGCATCGAAGGGCTTTGATCGATTATGCTACCCCAATTGTCGG
CGACTCGATGCGGGCCGAGGATGTGGTTCAGGAGGCATGGTTGCGATTCGATTCGGCCTCGCCTTCGCCGACATCCACCG
AAGCCGGGCGCGGGACGGCCCTCGAACGCCCCGTCGGCTACCTATACAAGATCGTGCGCAATCTCGCGGTGGACCTGTCT
CGGCGACTGAAACGGGAGGCCTGGATGGGCGATGGCGGGGCCAGTCTGGACGGGGTGGCGGCCGGCGCCCCGTCGCCCGA
ACAAGAGGCGATCGGCCGCGACGACCTGCGCGCCGTCGCCCAGGCCCTGGCCAGCCTGCCGCCCCGCACGCGGACCGCTT
TTGATCTGCACCGCTTCGAAAATTGCACCTTTGCCGAAATCGGCCAGCGCCTGGGCATCTCGCAGACCCGCGCCCATAGC
CTAGTCCACGAGGCTTTGGCCCATTGCCTCGATCACCTCGATCGGAGTTCAAAGCTTTGA

Upstream 100 bases:

>100_bases
GATAGTCGTTCGCAAATCTGCGGAAAGCCGCAGGGCCCATTATTCAAAAGCGAGGGGGGCTCGCCCCCTGTCGGGGGAGG
CGGGGCGAAGGCGGGTTTGC

Downstream 100 bases:

>100_bases
TCGAAAAAAACAATGGGGGAAAGCCCGGGGCCGTTCGTCTAACCAAGGAGGGGATGGAGGATCGTCCCGCATGCGCAAAA
AGCAGGGAGACGGCGATGGC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-; Extracytoplasmic-Function Sigma-70 Factor PvdS; Fec I Like Protein; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma-70 Family Protein; FecI-Like Protein; ECF Family Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FECI Protein; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; FecI Like Protein; PpiC-Type Peptidyl-Prolyl Cis-Trans Isomerase; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; Anti-FecI Sigma Factor FecR; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLYKIVRNLAVDLS
RRLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQALASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHS
LVHEALAHCLDHLDRSSKL

Sequences:

>Translated_179_residues
MTDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLYKIVRNLAVDLS
RRLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQALASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHS
LVHEALAHCLDHLDRSSKL
>Mature_178_residues
TDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLYKIVRNLAVDLSR
RLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQALASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSL
VHEALAHCLDHLDRSSKL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19677; Mature: 19546

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LERPVGYLYKIVRNLAVDLSRRLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH
QALASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSLVHEALAHCLDHLDRSSKL
HHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LERPVGYLYKIVRNLAVDLSRRLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH
QALASLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSLVHEALAHCLDHLDRSSKL
HHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA