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The map label for this gene is vanR [H]

Identifier: 83593514

GI number: 83593514

Start: 2531057

End: 2531776

Strand: Direct

Name: vanR [H]

Synonym: Rru_A2179

Alternate gene names: 83593514

Gene position: 2531057-2531776 (Clockwise)

Preceding gene: 83593506

Following gene: 83593515

Centisome position: 58.15

GC content: 66.81

Gene sequence:

>720_bases
ATGACGACGGCCTCTCCCGGTTTTGACGCCCACCTCGACGCCGCCTGCCGGCAGGCGATGGCGCTTGGCTTCGCCGCCGT
GCTCTATGATTACTCGCCGGTTCCGCGCGCCCATGACGGCACCCTGATCACCCCGACCATCCTGGAAACCCGCAATCTGC
CGGTCGATATGGCTGAGATCTGGTGCAAACAGGGGTATTATCAGATCGATCCGGTGCAAGACGCCGCCCTGTTGGTCAGC
GCGCCCTTCGTCTGGTCCCATGAGGGTGACCAAAGCGATGTCATGGCCCGGGTTCTGCGCGCCGAGCACCGACCGGTTCT
GGACTATCTCCGGCACCGTGGCCTGACCCGCGGCGTCACGGTGCCGATCCGCTGCGGCGAGGGGGCGCTGGCCACCTTCA
CGGCGATTGCCCCGAGCGGCGCGCCCTTCCCGCCCGAGGATCGGCTCTCGAGCCTGGGCCTGCTCGGCCAAAGCTTTCAC
GACCGGGTTTATCCCGGGTTTCCGGCCGCCAGCCATCTTTGCCCGGTTGTTCACCTGACCCGACGCGAGCGCGAGTGTTT
GGCGCTTTGCGGCGAGGGCCTGACCGCCAAGGAGATCGCCTATCGCATCGACCGTTCGGTGCCCACCGTGGTTTTCCACC
TGAGCGCCGCCACCCGCAAGCTGGGGGCGCGCAACCGCTTCCAGGCGATCGCCCGCGCCGCCTACTACCGCTTGTTATAA

Upstream 100 bases:

>100_bases
TTGGGCATTCCCCCGATCTTTTACGAGGGGAGGCCGGTTTGACGCTTTGCTGAGCAAGGATTAGGCTTATGCGCCGTGTT
CGATGACGAGGGCTTCCAGG

Downstream 100 bases:

>100_bases
CCTATGGGTTTTGACAGCTGTCGGACCGCGCCGATGGCCCCTAGGCTGGGGATTTCCAGTTCCAAGGAACGATCGCGGAG
GGCCAAAGGGTGGCAATTGA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQIDPVQDAALLVS
APFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFH
DRVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL

Sequences:

>Translated_239_residues
MTTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQIDPVQDAALLVS
APFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFH
DRVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL
>Mature_238_residues
TTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQIDPVQDAALLVSA
PFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHD
RVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26239; Mature: 26108

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHCCCCCCCHHHH
WCKQGYYQIDPVQDAALLVSAPFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVT
HHHCCCEEECCCCCCHHHEECCEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCE
VPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLT
EEEEECCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL
HHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHCCCCCCCHHHH
WCKQGYYQIDPVQDAALLVSAPFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVT
HHHCCCEEECCCCCCHHHEECCEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCE
VPIRCGEGALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLT
EEEEECCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL
HHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]