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The map label for this gene is dapA [H]

Identifier: 83593401

GI number: 83593401

Start: 2389661

End: 2390575

Strand: Direct

Name: dapA [H]

Synonym: Rru_A2066

Alternate gene names: 83593401

Gene position: 2389661-2390575 (Clockwise)

Preceding gene: 83593400

Following gene: 83593403

Centisome position: 54.9

GC content: 66.12

Gene sequence:

>915_bases
ATGACCGTCGACTGGAAAGGCGTTTTCCCCGCCGTCACCACCAAGTTCAAAGCCGATCTTTCCCTTGATGGCGACGAGAT
GCGCCGCTGCGTCCAGGCCCAGGTCGATGCCGGGGTCGATGGCCTCATCTGCTGCGGCTCGCTGGGCGAGGCCAGCACCC
TTGATATCGACGAGAAAGTCGCCGTGGTGGCCCTGGCCCTGGACGTCGCGGGCGGCCGCATCCCGGTGCTCGCCACCGTG
GCCGAGGCCACCACCGCCCGCGCCTGCGCCTTCGCCAAAAAGGCCGAGGAGATCGGCGCCGATGGCTTCATGATCTTGCC
GGGCATGCAATATGTGTCGGACGGCCGCGAAGCCGTGGCCCATTACCAAGCCGTGGCGGCAAGTGTCAGCAAGCCCTTGA
TGATCTACAACAATCCCGTCGCCTATCGGGTCGATCTCGGCGAGGAGGAGATCGCCACCCTGATCGAGGATCCGAAGTTC
GTCGCCATCAAGGAAAGCTCCGACGACGTGCGGCGCACGACCACCTTGCGCAATCGCTTCGGCGCGCGCCTGAAGATTTT
CGGCGGCGTCGATAATCTGGCGCTGGAAGGCCTGCTGATGGGGGCGGATGGCTGGGTGGCCGGCTTGGTCTGCGCCTTCC
CCCGCGAGACCGTCGCCATCTACCGGCTGGTTCGCGCCGGGCGGCTGGACGAGGCGCGCTCCCTCTATCGCTGGTTCGTA
CCGCTGCTTGAACTCGATGTCTCAACCAAGCTGGTGCAGAACATCAAATTGGCCGAAGCCCTGGCCTGCGGCTCGACCGA
AACCGTCCGCCCGCCGCGCCTGCCCCTTGTCGGGGCCGAACGTGCCCGCGTCGAAGCGATCATCCAGACCGCCCTGGCCT
GCCGCCCGGCCTTGCCCGATCTGGACAGCCTGTAG

Upstream 100 bases:

>100_bases
CCTCAATACCCTCTTCCTTTATGACGAAGAGCCCTATTCGCAGGGCTTCCTGCTGCCCTGACCCGCCTCCCCTTCTTTCC
TTTCCCTATAAGGACCCGCC

Downstream 100 bases:

>100_bases
AGCCCGCCAAAGCCCTGGCGGAGCCGCCCGTTCGCTCCTCCGCCAGGGACCTGCCCCTTATTCCGCCGCTGCCGCGACGG
GAAGCGGCTTTCCGCGCGCT

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTVDWKGVFPAVTTKFKADLSLDGDEMRRCVQAQVDAGVDGLICCGSLGEASTLDIDEKVAVVALALDVAGGRIPVLATV
AEATTARACAFAKKAEEIGADGFMILPGMQYVSDGREAVAHYQAVAASVSKPLMIYNNPVAYRVDLGEEEIATLIEDPKF
VAIKESSDDVRRTTTLRNRFGARLKIFGGVDNLALEGLLMGADGWVAGLVCAFPRETVAIYRLVRAGRLDEARSLYRWFV
PLLELDVSTKLVQNIKLAEALACGSTETVRPPRLPLVGAERARVEAIIQTALACRPALPDLDSL

Sequences:

>Translated_304_residues
MTVDWKGVFPAVTTKFKADLSLDGDEMRRCVQAQVDAGVDGLICCGSLGEASTLDIDEKVAVVALALDVAGGRIPVLATV
AEATTARACAFAKKAEEIGADGFMILPGMQYVSDGREAVAHYQAVAASVSKPLMIYNNPVAYRVDLGEEEIATLIEDPKF
VAIKESSDDVRRTTTLRNRFGARLKIFGGVDNLALEGLLMGADGWVAGLVCAFPRETVAIYRLVRAGRLDEARSLYRWFV
PLLELDVSTKLVQNIKLAEALACGSTETVRPPRLPLVGAERARVEAIIQTALACRPALPDLDSL
>Mature_303_residues
TVDWKGVFPAVTTKFKADLSLDGDEMRRCVQAQVDAGVDGLICCGSLGEASTLDIDEKVAVVALALDVAGGRIPVLATVA
EATTARACAFAKKAEEIGADGFMILPGMQYVSDGREAVAHYQAVAASVSKPLMIYNNPVAYRVDLGEEEIATLIEDPKFV
AIKESSDDVRRTTTLRNRFGARLKIFGGVDNLALEGLLMGADGWVAGLVCAFPRETVAIYRLVRAGRLDEARSLYRWFVP
LLELDVSTKLVQNIKLAEALACGSTETVRPPRLPLVGAERARVEAIIQTALACRPALPDLDSL

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=236, Percent_Identity=24.1525423728814, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI87082415, Length=242, Percent_Identity=30.5785123966942, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789620, Length=257, Percent_Identity=28.4046692607004, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786463, Length=279, Percent_Identity=27.9569892473118, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788823, Length=267, Percent_Identity=24.7191011235955, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 32638; Mature: 32507

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVDWKGVFPAVTTKFKADLSLDGDEMRRCVQAQVDAGVDGLICCGSLGEASTLDIDEKV
CCCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHH
AVVALALDVAGGRIPVLATVAEATTARACAFAKKAEEIGADGFMILPGMQYVSDGREAVA
EEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
HYQAVAASVSKPLMIYNNPVAYRVDLGEEEIATLIEDPKFVAIKESSDDVRRTTTLRNRF
HHHHHHHHHCCCEEEECCCEEEEEECCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
GARLKIFGGVDNLALEGLLMGADGWVAGLVCAFPRETVAIYRLVRAGRLDEARSLYRWFV
CCEEEEECCCCHHHHCEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
PLLELDVSTKLVQNIKLAEALACGSTETVRPPRLPLVGAERARVEAIIQTALACRPALPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
LDSL
CCCC
>Mature Secondary Structure 
TVDWKGVFPAVTTKFKADLSLDGDEMRRCVQAQVDAGVDGLICCGSLGEASTLDIDEKV
CCCCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHH
AVVALALDVAGGRIPVLATVAEATTARACAFAKKAEEIGADGFMILPGMQYVSDGREAVA
EEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
HYQAVAASVSKPLMIYNNPVAYRVDLGEEEIATLIEDPKFVAIKESSDDVRRTTTLRNRF
HHHHHHHHHCCCEEEECCCEEEEEECCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
GARLKIFGGVDNLALEGLLMGADGWVAGLVCAFPRETVAIYRLVRAGRLDEARSLYRWFV
CCEEEEECCCCHHHHCEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
PLLELDVSTKLVQNIKLAEALACGSTETVRPPRLPLVGAERARVEAIIQTALACRPALPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
LDSL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA