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The map label for this gene is ydfH [C]

Identifier: 83593398

GI number: 83593398

Start: 2386572

End: 2387240

Strand: Direct

Name: ydfH [C]

Synonym: Rru_A2063

Alternate gene names: 83593398

Gene position: 2386572-2387240 (Clockwise)

Preceding gene: 83593394

Following gene: 83593399

Centisome position: 54.83

GC content: 65.77

Gene sequence:

>669_bases
ATGACGACGACCCTCAACCGTCAAACCATGTCGAGCGGCCTCACCGCCCTGTTGCGCGACGCCATTCTCAATGGCCAGAT
CGCCGAGGGGACGCAACTGCGCCAGGACGCCCTGGCCCGCCAATACGAGGTCAGCCGCATTCCGGTGCGCGAAGCCTTGC
GCCAGTTGGAAGCCGAGGGGTTGATCATCGGCCATGCCCATCGCAGCTCGGTGGTCGCCTCGCTGTCGCTGTCGGAGATC
ACCGAGATCTTCGAGATCCGCTCGATCCTTGAACCCCACCTGCTGCGCCGCTCGCTCATCCATCTGTCGACCGCCGACTT
CGACCGGGCGGAAAGCGTGCTTGACGCCTATGACGCCGCCCTGGACGCCGGCGACATGGCGCGCTGGGGGGAACTGAACT
GGGTCTTCCACCAGATGCTGCTTGAACCGGCCGAGCGCCCGCAAACCATGGCGATCGTCGATGGCCTGCGCCGTCGGGTC
GATCGCTATACCCGGCTGCAGATCAATCTGACCGACGGCGCGCGCAAATCGCGACTCGAACATCGCGCCATCCTGGCCAA
GGCCCGGGCCGGCGCCGTCGAAGACTGCGCCGCGATGGTCCGCGACCATATTTTGGGGGCGGCCGGCGATCTGACCGGCT
TTCTGCGCGACAATTACGGCAAGGCCTGA

Upstream 100 bases:

>100_bases
TGGTCGCTTTACCTTGCCTGTTGGATCCTTTATCCCAACAGTTTCAGCCCGTGGTCCCATCCACGGCCGGCACGCCCGTG
TCCCTATGGGGGAAATCCCG

Downstream 100 bases:

>100_bases
TCGGGGAACGGCGACTTCCGCCGCCAGGACCCCACCAAAGCCCTGGACATTTTTGGATCCAATATACAAAATGGCTTTCG
TCCCTGGAGGCCAAAACCCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Transcription Regulator; GntR-Family Transcriptional Regulator; Regulatory Protein GntR HTH; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR Family Regulatory; Transcriptional Regulatory Protein; Regulatory Protein; Regulatory Protein GntR; Biotin Regulatory Protein BioR; Transcription Regulator Protein; Transcriptional Regulator Protein; Regulator PutR For Proline Utilization GntR Family; Transcription Regulator AsnC; Glycosyltransferase

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVREALRQLEAEGLIIGHAHRSSVVASLSLSEI
TEIFEIRSILEPHLLRRSLIHLSTADFDRAESVLDAYDAALDAGDMARWGELNWVFHQMLLEPAERPQTMAIVDGLRRRV
DRYTRLQINLTDGARKSRLEHRAILAKARAGAVEDCAAMVRDHILGAAGDLTGFLRDNYGKA

Sequences:

>Translated_222_residues
MTTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVREALRQLEAEGLIIGHAHRSSVVASLSLSEI
TEIFEIRSILEPHLLRRSLIHLSTADFDRAESVLDAYDAALDAGDMARWGELNWVFHQMLLEPAERPQTMAIVDGLRRRV
DRYTRLQINLTDGARKSRLEHRAILAKARAGAVEDCAAMVRDHILGAAGDLTGFLRDNYGKA
>Mature_221_residues
TTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVREALRQLEAEGLIIGHAHRSSVVASLSLSEIT
EIFEIRSILEPHLLRRSLIHLSTADFDRAESVLDAYDAALDAGDMARWGELNWVFHQMLLEPAERPQTMAIVDGLRRRVD
RYTRLQINLTDGARKSRLEHRAILAKARAGAVEDCAAMVRDHILGAAGDLTGFLRDNYGKA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24723; Mature: 24591

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVREALRQLEAEG
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
LIIGHAHRSSVVASLSLSEITEIFEIRSILEPHLLRRSLIHLSTADFDRAESVLDAYDAA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LDAGDMARWGELNWVFHQMLLEPAERPQTMAIVDGLRRRVDRYTRLQINLTDGARKSRLE
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHH
HRAILAKARAGAVEDCAAMVRDHILGAAGDLTGFLRDNYGKA
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVREALRQLEAEG
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
LIIGHAHRSSVVASLSLSEITEIFEIRSILEPHLLRRSLIHLSTADFDRAESVLDAYDAA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LDAGDMARWGELNWVFHQMLLEPAERPQTMAIVDGLRRRVDRYTRLQINLTDGARKSRLE
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHH
HRAILAKARAGAVEDCAAMVRDHILGAAGDLTGFLRDNYGKA
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA