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The map label for this gene is potD-A [H]

Identifier: 83593382

GI number: 83593382

Start: 2367031

End: 2368083

Strand: Reverse

Name: potD-A [H]

Synonym: Rru_A2047

Alternate gene names: 83593382

Gene position: 2368083-2367031 (Counterclockwise)

Preceding gene: 83593383

Following gene: 83593381

Centisome position: 54.4

GC content: 61.35

Gene sequence:

>1053_bases
ATGCGTTTGCTTTCCCGTTTCCTCTCCGGTACCGCCCTGGCCCTGTTGGCCAGCGGTATCGCCGCCTCGGCCCAGGCCCG
TGATCTTACGGTGGTTTCCTGGGGCGGCGCCTATCAAGAGGCGCAGAAGACGCTGTACTTCGCGCCGTTCACCGCCGAGA
CCGGCGTCGCCATGCTTGATGAATCGTGGGATGGCGGCATCGGCGTGCTGCGCGCCAAGGTCGAAGGCGGCAATGCCACC
TGGGACGTCGTTCAGGTCGAAAGCGATGAACTGGCGCTGGGTTGCGAAGAGGGGCTTTACGAAAAGCTGGACTTCGCCAA
GATCGGCGGCGCCGAGTCTTACATGAAGGAAGCCGTCAGCGAATGCGGCGTGGGCGCCATCGTCTATAATTTCGTGCTGG
GCTACGATAAGGACAAACTGAAGACTCCGCCCAAAAGCTGGGCCGATTTCTTTGATACCAAAACCTTCCCCGGCAAGCGC
GGCCTGCGCAACGGCCCCAAGACCACCCTTGAGATCGCCCTGATCGCCGATGGCGTCGCCCCGAACGATGTCTATTCCGT
TCTGGCGAGCGACGAGGGCGTCGAACGCGCCTTCAAGAAGCTTGATACCATCAAGAAGGACATCGTCTTCTGGAAGGCCG
GCGCCCAGCCGCCCCAGCTTCTCGCCTCGGGCGAAGTGGCGATGACCTCGATCTACAACGGTCGCGTCGATGCCGCCAAT
AAGGCCGATGGCCGCCATTTCGGCATCGTCTGGGACGGCAGCCTGTTCACCATCGACAGTTGGGTCGTCCTCAAGGGCTC
GCCCAATGTCGAAGGCGCCTATAAGTATCTGAATTACGTTGGCAAACCCGAGGTCCAGGCCAAGCTGCCCATGGCCATCG
CCTATGGCGTCACCAGCAAGGGCGCCAACGCCAAGATCGACCCCGAGCGGCTGAAGGATCTGCCCACCGCCGAGGCCAAT
ATCGCCAACGCCACCGAGATCGACACCACCTTCTGGCTTGAAAACATCGATCGCCTGACCGAGCGCTTCAATAAGTGGGC
CGCCGTCCAGTAA

Upstream 100 bases:

>100_bases
CTTGGGGCGGAGGATTGCCTGGCGCTCGATCCGGTCTGACCGGGGAAGGTCCAGGCTGCGCGCGGGCCGCCGGCCCATAA
CGATCAGGGAGAACACCACC

Downstream 100 bases:

>100_bases
GGACGCGCCCGCTCGGCGCCCGGGAACCCTGGGGAGGTGTTCCCGGGCGCACGGTTTGGGTTTTCTAGGAAGGGGAGATG
CCGATGGGCGCCGAGATGTC

Product: extracellular solute-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: SPBP [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MRLLSRFLSGTALALLASGIAASAQARDLTVVSWGGAYQEAQKTLYFAPFTAETGVAMLDESWDGGIGVLRAKVEGGNAT
WDVVQVESDELALGCEEGLYEKLDFAKIGGAESYMKEAVSECGVGAIVYNFVLGYDKDKLKTPPKSWADFFDTKTFPGKR
GLRNGPKTTLEIALIADGVAPNDVYSVLASDEGVERAFKKLDTIKKDIVFWKAGAQPPQLLASGEVAMTSIYNGRVDAAN
KADGRHFGIVWDGSLFTIDSWVVLKGSPNVEGAYKYLNYVGKPEVQAKLPMAIAYGVTSKGANAKIDPERLKDLPTAEAN
IANATEIDTTFWLENIDRLTERFNKWAAVQ

Sequences:

>Translated_350_residues
MRLLSRFLSGTALALLASGIAASAQARDLTVVSWGGAYQEAQKTLYFAPFTAETGVAMLDESWDGGIGVLRAKVEGGNAT
WDVVQVESDELALGCEEGLYEKLDFAKIGGAESYMKEAVSECGVGAIVYNFVLGYDKDKLKTPPKSWADFFDTKTFPGKR
GLRNGPKTTLEIALIADGVAPNDVYSVLASDEGVERAFKKLDTIKKDIVFWKAGAQPPQLLASGEVAMTSIYNGRVDAAN
KADGRHFGIVWDGSLFTIDSWVVLKGSPNVEGAYKYLNYVGKPEVQAKLPMAIAYGVTSKGANAKIDPERLKDLPTAEAN
IANATEIDTTFWLENIDRLTERFNKWAAVQ
>Mature_350_residues
MRLLSRFLSGTALALLASGIAASAQARDLTVVSWGGAYQEAQKTLYFAPFTAETGVAMLDESWDGGIGVLRAKVEGGNAT
WDVVQVESDELALGCEEGLYEKLDFAKIGGAESYMKEAVSECGVGAIVYNFVLGYDKDKLKTPPKSWADFFDTKTFPGKR
GLRNGPKTTLEIALIADGVAPNDVYSVLASDEGVERAFKKLDTIKKDIVFWKAGAQPPQLLASGEVAMTSIYNGRVDAAN
KADGRHFGIVWDGSLFTIDSWVVLKGSPNVEGAYKYLNYVGKPEVQAKLPMAIAYGVTSKGANAKIDPERLKDLPTAEAN
IANATEIDTTFWLENIDRLTERFNKWAAVQ

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37901; Mature: 37901

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSRFLSGTALALLASGIAASAQARDLTVVSWGGAYQEAQKTLYFAPFTAETGVAMLD
CHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCEEEEECCCCCCCCEEEC
ESWDGGIGVLRAKVEGGNATWDVVQVESDELALGCEEGLYEKLDFAKIGGAESYMKEAVS
CCCCCCEEEEEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHH
ECGVGAIVYNFVLGYDKDKLKTPPKSWADFFDTKTFPGKRGLRNGPKTTLEIALIADGVA
HCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC
PNDVYSVLASDEGVERAFKKLDTIKKDIVFWKAGAQPPQLLASGEVAMTSIYNGRVDAAN
CHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
KADGRHFGIVWDGSLFTIDSWVVLKGSPNVEGAYKYLNYVGKPEVQAKLPMAIAYGVTSK
CCCCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCEEEEECCCCC
GANAKIDPERLKDLPTAEANIANATEIDTTFWLENIDRLTERFNKWAAVQ
CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLLSRFLSGTALALLASGIAASAQARDLTVVSWGGAYQEAQKTLYFAPFTAETGVAMLD
CHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCEEEEECCCCCCCCEEEC
ESWDGGIGVLRAKVEGGNATWDVVQVESDELALGCEEGLYEKLDFAKIGGAESYMKEAVS
CCCCCCEEEEEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHH
ECGVGAIVYNFVLGYDKDKLKTPPKSWADFFDTKTFPGKRGLRNGPKTTLEIALIADGVA
HCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCC
PNDVYSVLASDEGVERAFKKLDTIKKDIVFWKAGAQPPQLLASGEVAMTSIYNGRVDAAN
CHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
KADGRHFGIVWDGSLFTIDSWVVLKGSPNVEGAYKYLNYVGKPEVQAKLPMAIAYGVTSK
CCCCCEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEECCEEEEECCCCC
GANAKIDPERLKDLPTAEANIANATEIDTTFWLENIDRLTERFNKWAAVQ
CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]