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The map label for this gene is ygiQ [C]

Identifier: 83593338

GI number: 83593338

Start: 2312818

End: 2314941

Strand: Reverse

Name: ygiQ [C]

Synonym: Rru_A2003

Alternate gene names: 83593338

Gene position: 2314941-2312818 (Counterclockwise)

Preceding gene: 83593339

Following gene: 83593336

Centisome position: 53.18

GC content: 66.38

Gene sequence:

>2124_bases
GTGGAAGCCGCCAAAAGCCTGTTTTCCTATAAGCCGTTCTGGGCCAAGCGCCTGGGCACGGCGCCTTTTTTGCCGATGTC
GCGGGCCGAGATGGACGCGCTTGGCTGGGACGCCTGCGACATCATCGTGGTGACCGGCGATGCCTATGTCGATCATGCCA
GCTTCGGCATGGCGGTGATCGGCCGCGTTCTTGAAGCCCAGGGCTTCCGCGTCGGCATCATCAGCCAACCCGATTGGACC
AGCGCCGACCCCTTCCGCGCACTGGGCCGGCCGACGCTGTTCTTCGGGGTGACGGCGGGCAACATGGATTCCATGGTCAA
CCGCTATACCTCGGACCGCAAGATCCGCAAGGACGACGCCTATACCCCGGGCGCCGAGGGTGGGCGCCGCCCCGATCGCG
CCGTCACCGTCTATTCCCAGCGTTGCCGCGAGGCCTTTCGCGATGTGCCGATCGTGCTTGGCGGCATCGAGGCCTCGCTG
CGCCGGGTCGCCCATTATGATTATTGGTCCGACAAGGTGCGGCGCTCGGTGATGCTTGATTCCAAGGCCGATATCTTGCT
GTTTGGCAATGCCGAGCGGGCCTTGATCGAGTTGGCCCACCGCTTGGCCAAGGGCGAGGCGATTTCGACCATCCGCGACC
TGCGCGGCACCGCCTATATGCTGCCCAGGGTTCCCGAAGGCTGGGCGGTGCTTGACGCCAGCGATGTCGATGCCGACAGC
GGCGCCATGCCGCGCGGTCCCCTAGGGGTGCCTGCGGTCATCCGCCTGCCGTCCTACGAGGTGGTGCGCGACGATCCGGT
GCAATACACCCACGCCAGCCGCGTCGGCCATCTGGAAAGCAATCCCGGCCATGCCCGGCCGCTGGTCCAGGCCCATGGCG
ACCGCGAGGTCTGGCTCAATCCGCCGCCGCTGCCCCTGGAAACCGGCGAGATGGACCGGGTGTTCGAACTGCCCTATGCC
CGCGCCCCCCATCCGTCCTATGGCGGGGCGCGCATTCCCGCCTGGGAGATGATCCGCTTCTCGGTCAATGTCATGCGCGG
CTGTTTTGGCGGCTGTTCGTTCTGCTCGATCACCGAGCACGAGGGCAAGGTGATCCAAAGCCGTTCGGAAGGCTCCATCC
TGCGCGAGATCGAACAGATTCGCGACAAGACCGAGGGCTTCACCGGCGTCGTCTCCGACCTGGGCGGGCCGACGGCCAAT
ATGTGGCGGCTGAATTGCAGTGACCCCAAGATCCAGGCGGTCTGCCGGCGCTGGTCTTGCGTCTATCCCGATATCTGCAA
GAACCTGGAAACCGATCAGACGCCGCTGGTCGATCTGTATCGCAAGGCCCGCGCCATCCAGGGCGTGAAGAAGATCACCA
TCGCCTCGGGCCTGCGCTACGATCTGGCGGTCAAGACCCCGGCCTATGTCAAGGAACTGGTCACCCACCATGTCGGCGGC
TATCTGAAGATCGCCCCGGAACATACCGAGGACGGGCCGCTGGCGCTGATGATGAAGCCGGGCATGGGAGCCTATGATCG
CTTCCGCGCCCTGTTCGAGACCTTCAGCAAGCAGGCCGGCAAGCAGCAGTTCCTCATCCCCTATTTCATCGCCGCCCATC
CGGGAACCACGGATGAGGATATGATGAACCTTGCCCTGTGGCTCAAGCGCAATCACTTCCGCGCCGATCAGGTGCAAACC
TTCCTGCCCTCGCCGATGTCGCTGGCCACCGCCATGTACCACGGCGAGCGCAACCCCTTGAAGCCGGTGCGCCGCGACGG
GCCGGTGGTGGCGACGGCCAAGGGCCTGCGCCAGCGCCGTCTGCACAAGGCCTTCTTGCGCTACCACGATCCCGAGAACT
GGCCGATGCTGCGCGAGGCCCTGCGCCAGATGGGCCGTACCGATCTGATCGGCATGAGCAAGAAGCACCTGATCCCCGGC
CACCAGCCCACCGGCACCGGATTGGCCGGCGGCGAGGGGGCGCGGGCCGGGCGCAAGAACGGTGCCCAAACCTTCCTTAC
CCAGCAAACCCGCCAGGGCCAAGGCCCCTATGACCCGACGCGCGGCGCCCCGTCCTGCCCGCGCGACGCGGCGCCGGGCG
CCAAGCCCGGCCGGGGCCGTCCCCGGCGCTCGACCGGGCGCTGA

Upstream 100 bases:

>100_bases
GTGCTTTGTTTCCGCCGCGCCTTAGGGTAAAACTCGCCCCCAGCAAGCGTTTTTAAAGTATCCGGCGGCGGGGGGGCGTC
CGCGGGAGCCGGAGGATAGA

Downstream 100 bases:

>100_bases
GGGAGCGTTTTTTAATACCCCCGGTCACGGGCGACCAGACCGGGGGGTGTTTCGCCGCGCTCCACCGCCTTGATCACCCG
GGCGACCTGGGCGGCGGCCG

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 707

Protein sequence:

>707_residues
MEAAKSLFSYKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVIGRVLEAQGFRVGIISQPDWT
SADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDAYTPGAEGGRRPDRAVTVYSQRCREAFRDVPIVLGGIEASL
RRVAHYDYWSDKVRRSVMLDSKADILLFGNAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVDADS
GAMPRGPLGVPAVIRLPSYEVVRDDPVQYTHASRVGHLESNPGHARPLVQAHGDREVWLNPPPLPLETGEMDRVFELPYA
RAPHPSYGGARIPAWEMIRFSVNVMRGCFGGCSFCSITEHEGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTAN
MWRLNCSDPKIQAVCRRWSCVYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAYVKELVTHHVGG
YLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGKQQFLIPYFIAAHPGTTDEDMMNLALWLKRNHFRADQVQT
FLPSPMSLATAMYHGERNPLKPVRRDGPVVATAKGLRQRRLHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPG
HQPTGTGLAGGEGARAGRKNGAQTFLTQQTRQGQGPYDPTRGAPSCPRDAAPGAKPGRGRPRRSTGR

Sequences:

>Translated_707_residues
MEAAKSLFSYKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVIGRVLEAQGFRVGIISQPDWT
SADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDAYTPGAEGGRRPDRAVTVYSQRCREAFRDVPIVLGGIEASL
RRVAHYDYWSDKVRRSVMLDSKADILLFGNAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVDADS
GAMPRGPLGVPAVIRLPSYEVVRDDPVQYTHASRVGHLESNPGHARPLVQAHGDREVWLNPPPLPLETGEMDRVFELPYA
RAPHPSYGGARIPAWEMIRFSVNVMRGCFGGCSFCSITEHEGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTAN
MWRLNCSDPKIQAVCRRWSCVYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAYVKELVTHHVGG
YLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGKQQFLIPYFIAAHPGTTDEDMMNLALWLKRNHFRADQVQT
FLPSPMSLATAMYHGERNPLKPVRRDGPVVATAKGLRQRRLHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPG
HQPTGTGLAGGEGARAGRKNGAQTFLTQQTRQGQGPYDPTRGAPSCPRDAAPGAKPGRGRPRRSTGR
>Mature_707_residues
MEAAKSLFSYKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVIGRVLEAQGFRVGIISQPDWT
SADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDAYTPGAEGGRRPDRAVTVYSQRCREAFRDVPIVLGGIEASL
RRVAHYDYWSDKVRRSVMLDSKADILLFGNAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVDADS
GAMPRGPLGVPAVIRLPSYEVVRDDPVQYTHASRVGHLESNPGHARPLVQAHGDREVWLNPPPLPLETGEMDRVFELPYA
RAPHPSYGGARIPAWEMIRFSVNVMRGCFGGCSFCSITEHEGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTAN
MWRLNCSDPKIQAVCRRWSCVYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAYVKELVTHHVGG
YLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGKQQFLIPYFIAAHPGTTDEDMMNLALWLKRNHFRADQVQT
FLPSPMSLATAMYHGERNPLKPVRRDGPVVATAKGLRQRRLHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPG
HQPTGTGLAGGEGARAGRKNGAQTFLTQQTRQGQGPYDPTRGAPSCPRDAAPGAKPGRGRPRRSTGR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=740, Percent_Identity=58.7837837837838, Blast_Score=892, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 78411; Mature: 78411

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAAKSLFSYKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVI
CCHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHH
GRVLEAQGFRVGIISQPDWTSADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDA
HHHHHCCCCEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC
YTPGAEGGRRPDRAVTVYSQRCREAFRDVPIVLGGIEASLRRVAHYDYWSDKVRRSVMLD
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHCC
SKADILLFGNAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVDADS
CCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCC
GAMPRGPLGVPAVIRLPSYEVVRDDPVQYTHASRVGHLESNPGHARPLVQAHGDREVWLN
CCCCCCCCCCCCEEECCCCCEECCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEC
PPPLPLETGEMDRVFELPYARAPHPSYGGARIPAWEMIRFSVNVMRGCFGGCSFCSITEH
CCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
EGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTANMWRLNCSDPKIQAVCRRWSC
CCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCC
VYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAYVKELVTHHVGG
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC
YLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGKQQFLIPYFIAAHPGTTDED
EEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHH
MMNLALWLKRNHFRADQVQTFLPSPMSLATAMYHGERNPLKPVRRDGPVVATAKGLRQRR
HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHCCCCEEEHHHHHHHHH
LHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPGHQPTGTGLAGGEGARAGRKN
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
GAQTFLTQQTRQGQGPYDPTRGAPSCPRDAAPGAKPGRGRPRRSTGR
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEAAKSLFSYKPFWAKRLGTAPFLPMSRAEMDALGWDACDIIVVTGDAYVDHASFGMAVI
CCHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHH
GRVLEAQGFRVGIISQPDWTSADPFRALGRPTLFFGVTAGNMDSMVNRYTSDRKIRKDDA
HHHHHCCCCEEEEECCCCCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC
YTPGAEGGRRPDRAVTVYSQRCREAFRDVPIVLGGIEASLRRVAHYDYWSDKVRRSVMLD
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHCC
SKADILLFGNAERALIELAHRLAKGEAISTIRDLRGTAYMLPRVPEGWAVLDASDVDADS
CCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCC
GAMPRGPLGVPAVIRLPSYEVVRDDPVQYTHASRVGHLESNPGHARPLVQAHGDREVWLN
CCCCCCCCCCCCEEECCCCCEECCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEC
PPPLPLETGEMDRVFELPYARAPHPSYGGARIPAWEMIRFSVNVMRGCFGGCSFCSITEH
CCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
EGKVIQSRSEGSILREIEQIRDKTEGFTGVVSDLGGPTANMWRLNCSDPKIQAVCRRWSC
CCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCC
VYPDICKNLETDQTPLVDLYRKARAIQGVKKITIASGLRYDLAVKTPAYVKELVTHHVGG
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC
YLKIAPEHTEDGPLALMMKPGMGAYDRFRALFETFSKQAGKQQFLIPYFIAAHPGTTDED
EEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHH
MMNLALWLKRNHFRADQVQTFLPSPMSLATAMYHGERNPLKPVRRDGPVVATAKGLRQRR
HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHCCCCEEEHHHHHHHHH
LHKAFLRYHDPENWPMLREALRQMGRTDLIGMSKKHLIPGHQPTGTGLAGGEGARAGRKN
HHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
GAQTFLTQQTRQGQGPYDPTRGAPSCPRDAAPGAKPGRGRPRRSTGR
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]