| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is 83593315
Identifier: 83593315
GI number: 83593315
Start: 2291703
End: 2292707
Strand: Direct
Name: 83593315
Synonym: Rru_A1980
Alternate gene names: NA
Gene position: 2291703-2292707 (Clockwise)
Preceding gene: 83593308
Following gene: 83593319
Centisome position: 52.65
GC content: 69.75
Gene sequence:
>1005_bases ATGAGCGATCAGCCCGCCTTGGCGCCGCTAACCTGGGCGGTGACCACCGGCGAAGCCGGGATGACCAATCAGGCGATCGG TCTGGCCGAAGCCATCGGCCTGCCGGTGGTCGCCAAGGTCATCCATGTGCCCAAGCCCTGGCGCTGGCTGCCCACCCATT GGGCGGCGCCTTTGGGCATCAAGACGCTTTGCGGTCCCGGTTCCGACGCCTTCACCCCGCCCTGGCCCGAGGTGCTGGTC ACCAGCGGCCGGCGCAGCGGCGCCCTGTCGATCGCGCTGCGCCGGGCCTCTGGCGGACGCACCCTGACGGTCCATATCCA GAACCCGTTGGTTCCCTTCGAGAATTTCGATCTGGTCATCGCCCCCGAACACGATGGGGTGGCGGCGGCCAATGTCGTGC AAAGCCTGGGCGCCTTGCACAAGATCACCCCGGCCAAACTCGCCGAAGCGGCCGAGCGCTTCCGGGCGCGCTTCGCCGCC CTGCCCCGGCCGCTGGTCGCCGTGCTGGTTGGCGGCACTAGCGGCGCCTATCGCCTGGAAGCCGAGGACACCCGGCGTTT GGCCCGACAACTGGCCGATCTGGTCGCCGCGCGCGGCGTCGGCCTGGTGGTCACGCCCTCGCGGCGCACCGGGGCAGCCA ATGCGGCGATCTTGCGCGAAACCCTGGAGCCGCTGGGCGCCCTGGTCTGGGATGGCGTTGGCGACAACCCCTATTTCGCC ATGCTCGCCCTGGCCGATGTTTTGCTGGTGACCGAGGAAAGCGTCTCGATGGTGTCCGAGGCGTGTTTTTCCGGCAAGCC GGTTTACACCATCGCCTTGCAAGGCGGCTCCAGGCGCTTCAAGCGCTTCCATGCCCTGATGCGCGACCGCGGCTATGCCC GCCCCTTCACCGGAACCCTCGAGCCCTGGGCCCCGCCGGCGCCGTTGGATGAAACGGCGCGCTGCGCCGCCATCGTCCGC ACCCTGCTCGCCCGCCGCCGCGAGGCCCTGGGCCTCACGCCGTAA
Upstream 100 bases:
>100_bases GGCTTGCAAAGCGCGAGCGCGAAACCATCGTCTTGCCCGGGCCCGGCCCGGGGGATAGGGTGCGCCGGAAAAGCACCGGG CGATTCCAGCGAGGACCCCT
Downstream 100 bases:
>100_bases GCAGAGTGCCGGTGCGGTGGGCCAAGGGCTCCTGGCCGGCGATCTTGCAGACGATATCGCCAGCGCGCACCAAACGCTGA TCGGACAGCCGGGCGAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MSDQPALAPLTWAVTTGEAGMTNQAIGLAEAIGLPVVAKVIHVPKPWRWLPTHWAAPLGIKTLCGPGSDAFTPPWPEVLV TSGRRSGALSIALRRASGGRTLTVHIQNPLVPFENFDLVIAPEHDGVAAANVVQSLGALHKITPAKLAEAAERFRARFAA LPRPLVAVLVGGTSGAYRLEAEDTRRLARQLADLVAARGVGLVVTPSRRTGAANAAILRETLEPLGALVWDGVGDNPYFA MLALADVLLVTEESVSMVSEACFSGKPVYTIALQGGSRRFKRFHALMRDRGYARPFTGTLEPWAPPAPLDETARCAAIVR TLLARRREALGLTP
Sequences:
>Translated_334_residues MSDQPALAPLTWAVTTGEAGMTNQAIGLAEAIGLPVVAKVIHVPKPWRWLPTHWAAPLGIKTLCGPGSDAFTPPWPEVLV TSGRRSGALSIALRRASGGRTLTVHIQNPLVPFENFDLVIAPEHDGVAAANVVQSLGALHKITPAKLAEAAERFRARFAA LPRPLVAVLVGGTSGAYRLEAEDTRRLARQLADLVAARGVGLVVTPSRRTGAANAAILRETLEPLGALVWDGVGDNPYFA MLALADVLLVTEESVSMVSEACFSGKPVYTIALQGGSRRFKRFHALMRDRGYARPFTGTLEPWAPPAPLDETARCAAIVR TLLARRREALGLTP >Mature_333_residues SDQPALAPLTWAVTTGEAGMTNQAIGLAEAIGLPVVAKVIHVPKPWRWLPTHWAAPLGIKTLCGPGSDAFTPPWPEVLVT SGRRSGALSIALRRASGGRTLTVHIQNPLVPFENFDLVIAPEHDGVAAANVVQSLGALHKITPAKLAEAAERFRARFAAL PRPLVAVLVGGTSGAYRLEAEDTRRLARQLADLVAARGVGLVVTPSRRTGAANAAILRETLEPLGALVWDGVGDNPYFAM LALADVLLVTEESVSMVSEACFSGKPVYTIALQGGSRRFKRFHALMRDRGYARPFTGTLEPWAPPAPLDETARCAAIVRT LLARRREALGLTP
Specific function: Unknown
COG id: COG3660
COG function: function code M; Predicted nucleoside-diphosphate-sugar epimerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35583; Mature: 35451
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQPALAPLTWAVTTGEAGMTNQAIGLAEAIGLPVVAKVIHVPKPWRWLPTHWAAPLGI CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCEECCCCCCCCCCC KTLCGPGSDAFTPPWPEVLVTSGRRSGALSIALRRASGGRTLTVHIQNPLVPFENFDLVI HHHCCCCCCCCCCCCCHHHEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEE APEHDGVAAANVVQSLGALHKITPAKLAEAAERFRARFAALPRPLVAVLVGGTSGAYRLE ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEC AEDTRRLARQLADLVAARGVGLVVTPSRRTGAANAAILRETLEPLGALVWDGVGDNPYFA HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH MLALADVLLVTEESVSMVSEACFSGKPVYTIALQGGSRRFKRFHALMRDRGYARPFTGTL HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC EPWAPPAPLDETARCAAIVRTLLARRREALGLTP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SDQPALAPLTWAVTTGEAGMTNQAIGLAEAIGLPVVAKVIHVPKPWRWLPTHWAAPLGI CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCEECCCCCCCCCCC KTLCGPGSDAFTPPWPEVLVTSGRRSGALSIALRRASGGRTLTVHIQNPLVPFENFDLVI HHHCCCCCCCCCCCCCHHHEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEE APEHDGVAAANVVQSLGALHKITPAKLAEAAERFRARFAALPRPLVAVLVGGTSGAYRLE ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEC AEDTRRLARQLADLVAARGVGLVVTPSRRTGAANAAILRETLEPLGALVWDGVGDNPYFA HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH MLALADVLLVTEESVSMVSEACFSGKPVYTIALQGGSRRFKRFHALMRDRGYARPFTGTL HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCC EPWAPPAPLDETARCAAIVRTLLARRREALGLTP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA