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The map label for this gene is ygcF [H]

Identifier: 83593294

GI number: 83593294

Start: 2267536

End: 2268243

Strand: Direct

Name: ygcF [H]

Synonym: Rru_A1959

Alternate gene names: 83593294

Gene position: 2267536-2268243 (Clockwise)

Preceding gene: 83593293

Following gene: 83593296

Centisome position: 52.09

GC content: 67.66

Gene sequence:

>708_bases
ATGTTCGGCCGGAACCCTGCGCGCGGCCCCGACCCCGGCGATGGTGAAAGCCTGTGGATCCAGGAAGTTTTCTACACCTT
GCAGGGCGAAGGGCCGTTTTCCGGCCAACCCAGCGTCTTCGTCCGCACCGCCGGCTGCAATCTGCGCTGCGCGTGGTGTG
ACACGGATTTCGAATCCTCGGCCTGGAAACCACCCTTGCCCGAGCTTCTGGCCGTGATCGACAGCCGCCGTCCCCGGGTT
TGTGATCTGGTGGTGCTGACCGGCGGCGAGCCGCTGCGCCAGGAGGTCGGCCCGCTGGTCCGCGCCCTGCTGGCTCGGGG
CCTGCGCGTGCAGATCGAGACCAATGGCACGCTATGGCGCGACCTGCCCTTCGGCCCCGGCCTCAGCATCGTTTGCAGTC
CGAAGACCCGCACCCTCGATCCCCAGTTGGTGCCCAGGATCGACGCCTTCAAATATGTGATCGCCGCCGGTGAAACCGAT
CCCACCGATGGCTTGCCCGCCCTGTCCACCCAGCACCCCGGGCGGGCCGAACGCCTGTTCCGCCCGCCCCCCGGGGTACC
GGTGTTCGTCATGCCGCGCGACGACCATGGAACACCCGCGCGGCCCGGCCGGGGCGAAGACGATAACTTGGCCGAAGCGG
CGGCCTCGGCCCTGCGCTTTGGCTATCGCCTATGCGTCCAGGTCCACAAAATCCTGAAGATCGCCTAG

Upstream 100 bases:

>100_bases
GCGAAGCCGGGCGGGCGGAAAGCCGCCCCCATGCCCTGGACCGCGCCCCCGCCCCGCCCCCCGATTACGCGAGGCTGTTC
GTCGAGGAGGAGGCCTGAGC

Downstream 100 bases:

>100_bases
GTGTTCCGTCCGGCGGACGGGGACACGATCGCGCGGGATCGCGCAGTGCCGTCATCGCACGGTATTCAGTTTCAACCGAT
CCGCTGAGACAGTTCGATTT

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MFGRNPARGPDPGDGESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNLRCAWCDTDFESSAWKPPLPELLAVIDSRRPRV
CDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLWRDLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETD
PTDGLPALSTQHPGRAERLFRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKIA

Sequences:

>Translated_235_residues
MFGRNPARGPDPGDGESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNLRCAWCDTDFESSAWKPPLPELLAVIDSRRPRV
CDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLWRDLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETD
PTDGLPALSTQHPGRAERLFRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKIA
>Mature_235_residues
MFGRNPARGPDPGDGESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNLRCAWCDTDFESSAWKPPLPELLAVIDSRRPRV
CDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLWRDLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETD
PTDGLPALSTQHPGRAERLFRPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=242, Percent_Identity=28.9256198347107, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25642; Mature: 25642

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGRNPARGPDPGDGESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNLRCAWCDTDFESS
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
AWKPPLPELLAVIDSRRPRVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLWR
CCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEE
DLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETDPTDGLPALSTQHPGRAERLF
ECCCCCCCEEEECCCCCCCCHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHCC
RPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKIA
CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFGRNPARGPDPGDGESLWIQEVFYTLQGEGPFSGQPSVFVRTAGCNLRCAWCDTDFESS
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
AWKPPLPELLAVIDSRRPRVCDLVVLTGGEPLRQEVGPLVRALLARGLRVQIETNGTLWR
CCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEE
DLPFGPGLSIVCSPKTRTLDPQLVPRIDAFKYVIAAGETDPTDGLPALSTQHPGRAERLF
ECCCCCCCEEEECCCCCCCCHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHCC
RPPPGVPVFVMPRDDHGTPARPGRGEDDNLAEAAASALRFGYRLCVQVHKILKIA
CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]