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The map label for this gene is cspA [C]

Identifier: 83593249

GI number: 83593249

Start: 2218884

End: 2219090

Strand: Direct

Name: cspA [C]

Synonym: Rru_A1914

Alternate gene names: 83593249

Gene position: 2218884-2219090 (Clockwise)

Preceding gene: 83593247

Following gene: 83593250

Centisome position: 50.98

GC content: 58.94

Gene sequence:

>207_bases
ATGTCCACTGGCACCGTGAAGTGGTTTAATACGACAAAGGGTTTTGGCTTCATCGCTCCCGATAACGGCGGCGCTGACGC
TTTCGTGCACATCACCGCCCTGGAGCGCGCCGGCATCCATAGCCTCAACGAAGGTCAGCGCGTGACCTACGACCTGGAAA
TGGGTCGGACCGGCAAGATGGCCGCCATCAACATTCGCCTCGCCTAA

Upstream 100 bases:

>100_bases
TCGGCTACCCCTAAAGGCGCCAACGGATTTCTTCCCACTGATGATTTGATGTTCGCGCGCAATAGTGTGCCCGGACAACG
CCAGTCGTGGAGGAACAAAA

Downstream 100 bases:

>100_bases
TCGGGTTGGCAGGCGGAGGACCGGGCCTTAACCGGCCCTCCTCCGCCCCTCCCTTGGACCGCGCCGTTCTCTGGCAGATC
GGTCCATTGACCGATTTGTC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSTGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDLEMGRTGKMAAINIRLA

Sequences:

>Translated_68_residues
MSTGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDLEMGRTGKMAAINIRLA
>Mature_67_residues
STGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDLEMGRTGKMAAINIRLA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=59, Percent_Identity=54.2372881355932, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=60, Percent_Identity=53.3333333333333, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787839, Length=60, Percent_Identity=51.6666666666667, Blast_Score=69, Evalue=4e-14,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=43.2835820895522, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=48.3870967741936, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787834, Length=60, Percent_Identity=46.6666666666667, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7327; Mature: 7196

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDLEMGRTGKM
CCCCEEEEEECCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCE
AAINIRLA
EEEEEEEC
>Mature Secondary Structure 
STGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTYDLEMGRTGKM
CCCEEEEEECCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCE
AAINIRLA
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]