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The map label for this gene is yebA [H]

Identifier: 83593203

GI number: 83593203

Start: 2165349

End: 2166731

Strand: Reverse

Name: yebA [H]

Synonym: Rru_A1868

Alternate gene names: 83593203

Gene position: 2166731-2165349 (Counterclockwise)

Preceding gene: 83593208

Following gene: 83593202

Centisome position: 49.78

GC content: 63.99

Gene sequence:

>1383_bases
ATGTCGGAGTTCGACCCCCAGGATCTGCACCTTTCCCAGGTCCGACGCCTGCTCCGCCGCCATTTCCCCGATCGCCACCT
CATGGTCCGCTCCGATGGGGCGATGCGGCAGTTCACCGTCACCGGCCTCCATCAGATCGGCTTGCTCGTCGTGGCCCTGG
GTTTCTTCGGCTGGGTCACCTATGCCACCGTCGCCCTGGTGTGGATGGACGATATCCTGTCGGCCAAGAACGAACGCATC
GACGATGCCCGCGACGCCTATAAGGCGCTGCTGGCCGAAGTGGGGGTTTATAAGGAAAAGGTCGTCGAGGTCACCCACTC
GCTGCAAGGCAATCACGCCGAATTCAATCGCCTGCTCGGCACCGGCGAGACCAGGGAGGTCGCCGCGCCGACGGCGGCGG
CGGACGGGGCGGGGAACGGGGCGGGGAACGGGGCGGCCGCGGGGGTCGCCGGCGGCCAGGACGCCGATTTCCTCAAGGAG
CAGAAGCGGTACGACCGCGAACGGCAAACGCTCATGGCCCAGCTCGCCACCCTTCAGCAAGGGATGGAGGATCTGTCGAA
GGCCAAGGTGCTGCTGACCGATTTCGATGGCATCGAGCTCGAGATGCGCAAGGTGGTGCTCCAGCGCGATCTGGCTTTGG
CCGAGAACCAGGATCTGCTCAAAAAGATCCGCTCGATGGAAAGCACGCTTCTCGACATGAAGGACGCCCAGAAGCGTCTG
GTCGATCGCTTTGGCAAGATGGCCCAGCAACGCATCGGCGCCCTGGAAGAGGATCTGTCGGCCACCGGCCTCGATGTCGC
CTCGCTGCTCCGGCGCAAGGGCAGGCGCTTTCAGCCGGTCGGCGGTCAGGGCGGACCCTTCCTGCCCGTCGAACTGCCCG
CTGTCGAGGATGAACCGGCGCGTGACAGCCTTGATCGGCTGAACGAGCGCCTCGACCGCTGGGGCATGCTCAACGCCCTG
ATCTTCGATCTGCCCCTTGCCGCGCCTTTGGCCACCAGCTATCGGATCAATTCCCCCTTTGGCGTGCGCGAAGATCCGGT
CAATGGCCGGCTGTCGCGCCACGAGGGTCTGGATATGGGCGCGCCGATGGATACGCCGGTGTCGGCGACCGGACCGGGGA
AGGTGGTTTACGCCGGCTGGCGGGGCCGCTATGGTCGAGTGGTTGAAATAGACCACGGTATGGGGCTATCTACCCGCTAT
GCCCATCTGCGTACGATCAAAGTGCAGCTTGGGCAATCGGTGGGGCGGGGAGACGTGATTGGCGCCTTGGGCAATAGCGG
CCGCAGCACCGGTCCGCATCTGCATTACGAGGTGCGTGTCAACGGCAATCCAAGAAACCCGACGGTTTTCTTGAAAGCGG
GGAAAAATGTTTTCGAAGGCTAG

Upstream 100 bases:

>100_bases
GCCACGGATCCATCGAAGCCGCCGCCTTCGCCCGCAAGGCGGAAAACGGCACGAATGCTCCCTGGGTCGGGATGGGGGCG
GATTTGGAACAGGAGACCTC

Downstream 100 bases:

>100_bases
CTCCAAACGGTCGACCGCCGAAGTCGGCAAGCCCGAGGGTACCCCTGATCGCGGCGTTCCCTCGATCATCAGCGCCGATC
TGACCATCACCGGCGATCTT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MSEFDPQDLHLSQVRRLLRRHFPDRHLMVRSDGAMRQFTVTGLHQIGLLVVALGFFGWVTYATVALVWMDDILSAKNERI
DDARDAYKALLAEVGVYKEKVVEVTHSLQGNHAEFNRLLGTGETREVAAPTAAADGAGNGAGNGAAAGVAGGQDADFLKE
QKRYDRERQTLMAQLATLQQGMEDLSKAKVLLTDFDGIELEMRKVVLQRDLALAENQDLLKKIRSMESTLLDMKDAQKRL
VDRFGKMAQQRIGALEEDLSATGLDVASLLRRKGRRFQPVGGQGGPFLPVELPAVEDEPARDSLDRLNERLDRWGMLNAL
IFDLPLAAPLATSYRINSPFGVREDPVNGRLSRHEGLDMGAPMDTPVSATGPGKVVYAGWRGRYGRVVEIDHGMGLSTRY
AHLRTIKVQLGQSVGRGDVIGALGNSGRSTGPHLHYEVRVNGNPRNPTVFLKAGKNVFEG

Sequences:

>Translated_460_residues
MSEFDPQDLHLSQVRRLLRRHFPDRHLMVRSDGAMRQFTVTGLHQIGLLVVALGFFGWVTYATVALVWMDDILSAKNERI
DDARDAYKALLAEVGVYKEKVVEVTHSLQGNHAEFNRLLGTGETREVAAPTAAADGAGNGAGNGAAAGVAGGQDADFLKE
QKRYDRERQTLMAQLATLQQGMEDLSKAKVLLTDFDGIELEMRKVVLQRDLALAENQDLLKKIRSMESTLLDMKDAQKRL
VDRFGKMAQQRIGALEEDLSATGLDVASLLRRKGRRFQPVGGQGGPFLPVELPAVEDEPARDSLDRLNERLDRWGMLNAL
IFDLPLAAPLATSYRINSPFGVREDPVNGRLSRHEGLDMGAPMDTPVSATGPGKVVYAGWRGRYGRVVEIDHGMGLSTRY
AHLRTIKVQLGQSVGRGDVIGALGNSGRSTGPHLHYEVRVNGNPRNPTVFLKAGKNVFEG
>Mature_459_residues
SEFDPQDLHLSQVRRLLRRHFPDRHLMVRSDGAMRQFTVTGLHQIGLLVVALGFFGWVTYATVALVWMDDILSAKNERID
DARDAYKALLAEVGVYKEKVVEVTHSLQGNHAEFNRLLGTGETREVAAPTAAADGAGNGAGNGAAAGVAGGQDADFLKEQ
KRYDRERQTLMAQLATLQQGMEDLSKAKVLLTDFDGIELEMRKVVLQRDLALAENQDLLKKIRSMESTLLDMKDAQKRLV
DRFGKMAQQRIGALEEDLSATGLDVASLLRRKGRRFQPVGGQGGPFLPVELPAVEDEPARDSLDRLNERLDRWGMLNALI
FDLPLAAPLATSYRINSPFGVREDPVNGRLSRHEGLDMGAPMDTPVSATGPGKVVYAGWRGRYGRVVEIDHGMGLSTRYA
HLRTIKVQLGQSVGRGDVIGALGNSGRSTGPHLHYEVRVNGNPRNPTVFLKAGKNVFEG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=123, Percent_Identity=50.4065040650407, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082297, Length=107, Percent_Identity=34.5794392523364, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50537; Mature: 50406

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFDPQDLHLSQVRRLLRRHFPDRHLMVRSDGAMRQFTVTGLHQIGLLVVALGFFGWVT
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
YATVALVWMDDILSAKNERIDDARDAYKALLAEVGVYKEKVVEVTHSLQGNHAEFNRLLG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
TGETREVAAPTAAADGAGNGAGNGAAAGVAGGQDADFLKEQKRYDRERQTLMAQLATLQQ
CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GMEDLSKAKVLLTDFDGIELEMRKVVLQRDLALAENQDLLKKIRSMESTLLDMKDAQKRL
HHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VDRFGKMAQQRIGALEEDLSATGLDVASLLRRKGRRFQPVGGQGGPFLPVELPAVEDEPA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
RDSLDRLNERLDRWGMLNALIFDLPLAAPLATSYRINSPFGVREDPVNGRLSRHEGLDMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCC
APMDTPVSATGPGKVVYAGWRGRYGRVVEIDHGMGLSTRYAHLRTIKVQLGQSVGRGDVI
CCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHEEEHHCCCCCCCCEE
GALGNSGRSTGPHLHYEVRVNGNPRNPTVFLKAGKNVFEG
ECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHCCC
>Mature Secondary Structure 
SEFDPQDLHLSQVRRLLRRHFPDRHLMVRSDGAMRQFTVTGLHQIGLLVVALGFFGWVT
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
YATVALVWMDDILSAKNERIDDARDAYKALLAEVGVYKEKVVEVTHSLQGNHAEFNRLLG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
TGETREVAAPTAAADGAGNGAGNGAAAGVAGGQDADFLKEQKRYDRERQTLMAQLATLQQ
CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GMEDLSKAKVLLTDFDGIELEMRKVVLQRDLALAENQDLLKKIRSMESTLLDMKDAQKRL
HHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VDRFGKMAQQRIGALEEDLSATGLDVASLLRRKGRRFQPVGGQGGPFLPVELPAVEDEPA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
RDSLDRLNERLDRWGMLNALIFDLPLAAPLATSYRINSPFGVREDPVNGRLSRHEGLDMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCC
APMDTPVSATGPGKVVYAGWRGRYGRVVEIDHGMGLSTRYAHLRTIKVQLGQSVGRGDVI
CCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHEEEHHCCCCCCCCEE
GALGNSGRSTGPHLHYEVRVNGNPRNPTVFLKAGKNVFEG
ECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]