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The map label for this gene is bepC [H]

Identifier: 83593133

GI number: 83593133

Start: 2091636

End: 2093252

Strand: Reverse

Name: bepC [H]

Synonym: Rru_A1798

Alternate gene names: 83593133

Gene position: 2093252-2091636 (Counterclockwise)

Preceding gene: 83593134

Following gene: 83593132

Centisome position: 48.09

GC content: 65.24

Gene sequence:

>1617_bases
GTGTTTTGCGTTGCACCCCTCTGGTGGTCGTGCATTCTTACAAAAGGGGAGGCCACGCCTTTCCTTTGCGACGATCTCCG
TCTTGCCGTCCCCTTTGGGGCGCGGGCGGAGCGGGCGCCCGAGCGGACCGTTTTCGAGGCCTTTCGAGAGAAACTCATGA
TAAAGCCAGTATCCATTGCCGTTGCCTCCCTGCTGGTCGCCGGGCTCGGTCTGTCCTCGCCGGTCATGGCCGAAACCTTC
GACGAGGCCTTGGTTTCCGCCTATCAGGCCAATCCCACCTTGCAGGCGCGCCGCGCCCTGCTGCGCGCCGTCGACGAACA
GGTGCCCCAGGCGCTGTCGGACTGGCGCCCCCAGGTCTCGGTCCAGGGCTCGACTTTCTATCAGCAAATGGATTACGAGC
CCGGCCGCAAGAACCTCGACAACCGGCCCGCGACCCTGGGCGTGGTCCTTCAGCAAAACATCTTCCGCGGCTTGCGGACG
GTGGCCCAGACCGATCAGGCCAAGGCCCAGGTCCAGTCCGAGCGGGCGTTGCTGCGTTCGGTCGAGCAGACCGTGCTGCT
CAATGCCGCCCAGGCCTATTTCAACGTGATCCGCGATCAGGCGGTTCTCGAATTGAACATCAACAACGAACAGGTTCTGC
GCCGCCAGCTCGACGCGGCCAATGACCGGTTCCGGGTCGGCGAGATCACCCGCACCGATGTCGCCCAGGCCGATTCGCGG
CTCGCCGGCGCCATCGCCGATCGCATCCAGGCCGAGGGCACGCTGGAAAGCAGCCGGGCCAATTACACCCAGGTGGTCGG
CCATCCGCCCGAGAACATCCAGCCGCCGCCGCCCTATGCCCGTCTTCCCCAAACCCTGGAAGATGGCCTCAACACGGCGC
TTTCGGCCAATCCCGACGTCATCGCCGCCCTGTACGTCTGGCGTCAGGCCCAGGCCGCCATCCGCGATCAGCGCGGCAAG
CTTCTGCCGACGCTGAACGCCGAGGTGTCCTATAGTTTTTCGCATAATCCGTCGGCGACCACCGAATACGACACCAAGAC
CTTCCAGGCCGGCCTCAATCTGACGGTGCCACTCTACCAGGGTGGGGCGGTCTATTCGCAGATCCGTGACGCCAAGCACC
GCGCCGGTCAGCGCCGGCTGCAGGTTGACGAGCAGCGCGAGGCGGTGATCGAATCCTTGACCTCGGCCTGGGAAACCCTG
ACCTCGGCCCGCGCCCGGGTATCGTCCTATAAAAGCCAGATCGAGGCGGCGGGGATCGCCCTTGATGGGGTGCAGCGCGA
GGCCCAGGTCGGGTCGCGCACGGTGCTCGACGTTCTCGACGCCGAGCAGGAGCTGCTGACCTCGCGGGTCAATCTGGTGC
GCGCCGAGCGGGATTCGGCGATTTCCACCTATGAGGTGTTGGCCGCCCTTGGCGCGATGACCGCCGAGGATCTGGGGCTG
AACACGCCGCTCTATGACGCCACCGCCCATTACAACGACGTGAAGGGGCAGTGGATCGGCGGCAATGATCTGGCCAATCA
GGACGAGGATCTGATCGTCAAAACGGCGCCGCCGATCGACGGCGACAGTATGACCCGTCCGGTGCGCGCCCTCGACAGCG
CCACCGGAACCCGCTAG

Upstream 100 bases:

>100_bases
AAGAAACCCCCGCCTTCGTTTTCTGATCCCGTCCATCCCATCCCGTCCGGTGGGCCGCCGATCGGGGGCGGGCGGCCGTC
GGTCGGGGGCCTCGGCGTTG

Downstream 100 bases:

>100_bases
GGGGGACGGCCGTTCTGATGATCATCAGACACCGGAAGAGCCGATCGACTCTTCCGGTGTTTTTGTTTCCAAGGAAGTCC
TAAGTGTAACGGATTGTTTA

Product: Type I secretion outer membrane protein, TolC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MFCVAPLWWSCILTKGEATPFLCDDLRLAVPFGARAERAPERTVFEAFREKLMIKPVSIAVASLLVAGLGLSSPVMAETF
DEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVSVQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRT
VAQTDQAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSR
LAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGK
LLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETL
TSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAEDLGL
NTPLYDATAHYNDVKGQWIGGNDLANQDEDLIVKTAPPIDGDSMTRPVRALDSATGTR

Sequences:

>Translated_538_residues
MFCVAPLWWSCILTKGEATPFLCDDLRLAVPFGARAERAPERTVFEAFREKLMIKPVSIAVASLLVAGLGLSSPVMAETF
DEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVSVQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRT
VAQTDQAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSR
LAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGK
LLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETL
TSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAEDLGL
NTPLYDATAHYNDVKGQWIGGNDLANQDEDLIVKTAPPIDGDSMTRPVRALDSATGTR
>Mature_538_residues
MFCVAPLWWSCILTKGEATPFLCDDLRLAVPFGARAERAPERTVFEAFREKLMIKPVSIAVASLLVAGLGLSSPVMAETF
DEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVSVQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRT
VAQTDQAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSR
LAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGK
LLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETL
TSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAEDLGL
NTPLYDATAHYNDVKGQWIGGNDLANQDEDLIVKTAPPIDGDSMTRPVRALDSATGTR

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=424, Percent_Identity=27.8301886792453, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 59028; Mature: 59028

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCVAPLWWSCILTKGEATPFLCDDLRLAVPFGARAERAPERTVFEAFREKLMIKPVSIA
CEECHHHHHHHHHCCCCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
VASLLVAGLGLSSPVMAETFDEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
VQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRTVAQTDQAKAQVQSERALLRS
ECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSR
HHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
LAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDV
HHHHHHHHHHCCCCCHHCCCCCCEECCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHH
IAALYVWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQ
HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEC
GGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKSQIEAAGIA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAEDLGL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
NTPLYDATAHYNDVKGQWIGGNDLANQDEDLIVKTAPPIDGDSMTRPVRALDSATGTR
CCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFCVAPLWWSCILTKGEATPFLCDDLRLAVPFGARAERAPERTVFEAFREKLMIKPVSIA
CEECHHHHHHHHHCCCCCCCEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
VASLLVAGLGLSSPVMAETFDEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
VQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRTVAQTDQAKAQVQSERALLRS
ECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSR
HHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
LAGAIADRIQAEGTLESSRANYTQVVGHPPENIQPPPPYARLPQTLEDGLNTALSANPDV
HHHHHHHHHHCCCCCHHCCCCCCEECCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHH
IAALYVWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPSATTEYDTKTFQAGLNLTVPLYQ
HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEEC
GGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKSQIEAAGIA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAEDLGL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
NTPLYDATAHYNDVKGQWIGGNDLANQDEDLIVKTAPPIDGDSMTRPVRALDSATGTR
CCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]