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The map label for this gene is fixK [H]

Identifier: 83593122

GI number: 83593122

Start: 2078637

End: 2079428

Strand: Reverse

Name: fixK [H]

Synonym: Rru_A1787

Alternate gene names: 83593122

Gene position: 2079428-2078637 (Counterclockwise)

Preceding gene: 83593125

Following gene: 83593121

Centisome position: 47.77

GC content: 60.1

Gene sequence:

>792_bases
GTGTTGACACCCACGGAAGACGGGGAGCTGAAGACCGCCCTAAAAAAGCCGATACGATCTTTCGTATCTACTTCTTGCGA
AACGTGCCCCTTGCGAAAGCTATCTTCGGTTCGCGCCTTTTCCGAGGAGGAAATGTCGTTTATCAAGGGCTTCAAGGTTG
CCGATCAGGAACTTTCCGCCGGCACCACCCTGTTACACGAGGGCGAGAACAGCGCTTTCGTCTATACGGTGAGAAGCGGC
TGGGCGATCCGCTATAAGCTTTTGGAGGATGGTCGCCGGCAAGTCCTCAATTTCGTGCTGCCGGGCGATCTGATCGGCCT
GCAGGCCAGCTTGTTTTCCGAGATGGAGCATTCGGTGGAAACGTTGACGCCGGTGGGCGTGTGCTGTTTTCCCCGTGAGC
GCTTCCTTGAGCTTGCCCAGGAGGGCGCCGGTCTGGCCTTCGACGTGATCTGGTTGACGGCGCGCGAGGAGCAGGCGATC
AGCGAGCACTTGCTTTCGGTCGGCCAGCGCACCGCCCTCGAACGGGTGGCCTATGTGCTGCTTTATCTCCATGACCGTCT
GGCCCTTCTGGAAAAGGTGCGGGACGGCGCCTTCGAAGCGCCGTTCAGCCAGCAGCTTTTGGCCGATGTCTTGGGGTTGT
CGCTGGTTCATACCAACAAGACCCTGCGCAAGCTGGTGGACCGCGGCTTCGTTCGCTGGACCCAGGGCACCATCCACCTT
GTCAATCTCGCCGACCTGCGCGAGTTGGCCTGCTATCCGCGCCGCCGGCCGCAAAGACGGCCGTTCCTGTAA

Upstream 100 bases:

>100_bases
ACAGGGATCCAAAGAAGAAGTCAGCCATGCTGAGCCCAATTTTCGATGCCGACATTAAACTAAGACATAAAAAATCAAGA
ATTTCCCAGGAGGACGCCCG

Downstream 100 bases:

>100_bases
GGCGGCCGGGGCGTCTTCGTACTTTGACCACCCGGGGTCGGCGGAGTAGAGTCGCCCTCCCCGACGGTCGGGGATTTTTT
CGGGTGATCAAGACAGGCTC

Product: cyclic nucleotide-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKGFKVADQELSAGTTLLHEGENSAFVYTVRSG
WAIRYKLLEDGRRQVLNFVLPGDLIGLQASLFSEMEHSVETLTPVGVCCFPRERFLELAQEGAGLAFDVIWLTAREEQAI
SEHLLSVGQRTALERVAYVLLYLHDRLALLEKVRDGAFEAPFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHL
VNLADLRELACYPRRRPQRRPFL

Sequences:

>Translated_263_residues
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKGFKVADQELSAGTTLLHEGENSAFVYTVRSG
WAIRYKLLEDGRRQVLNFVLPGDLIGLQASLFSEMEHSVETLTPVGVCCFPRERFLELAQEGAGLAFDVIWLTAREEQAI
SEHLLSVGQRTALERVAYVLLYLHDRLALLEKVRDGAFEAPFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHL
VNLADLRELACYPRRRPQRRPFL
>Mature_263_residues
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKGFKVADQELSAGTTLLHEGENSAFVYTVRSG
WAIRYKLLEDGRRQVLNFVLPGDLIGLQASLFSEMEHSVETLTPVGVCCFPRERFLELAQEGAGLAFDVIWLTAREEQAI
SEHLLSVGQRTALERVAYVLLYLHDRLALLEKVRDGAFEAPFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHL
VNLADLRELACYPRRRPQRRPFL

Specific function: B.japonicum has two fixLJ-dependent fixK homologs that are activators of the transcription of a group of genes involved in anaerobic processes such as denitrification and possibly nitrogen fixation. FixK may bind DNA at the FNR consensus binding site [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787595, Length=229, Percent_Identity=23.1441048034935, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 29736; Mature: 29736

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKGFKVADQELSA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GTTLLHEGENSAFVYTVRSGWAIRYKLLEDGRRQVLNFVLPGDLIGLQASLFSEMEHSVE
CCCEEECCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TLTPVGVCCFPRERFLELAQEGAGLAFDVIWLTAREEQAISEHLLSVGQRTALERVAYVL
HHCCCCEEECCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LYLHDRLALLEKVRDGAFEAPFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEEE
VNLADLRELACYPRRRPQRRPFL
EEHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKGFKVADQELSA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
GTTLLHEGENSAFVYTVRSGWAIRYKLLEDGRRQVLNFVLPGDLIGLQASLFSEMEHSVE
CCCEEECCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TLTPVGVCCFPRERFLELAQEGAGLAFDVIWLTAREEQAISEHLLSVGQRTALERVAYVL
HHCCCCEEECCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LYLHDRLALLEKVRDGAFEAPFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEEE
VNLADLRELACYPRRRPQRRPFL
EEHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1551834; 12597275 [H]