Click here to switch to the map view.

The map label for this gene is sodC2 [H]

Identifier: 83593117

GI number: 83593117

Start: 2073706

End: 2074176

Strand: Reverse

Name: sodC2 [H]

Synonym: Rru_A1782

Alternate gene names: 83593117

Gene position: 2074176-2073706 (Counterclockwise)

Preceding gene: 83593118

Following gene: 83593115

Centisome position: 47.65

GC content: 66.24

Gene sequence:

>471_bases
ATGCTGATCAACACCAAGGGCGAGACGATCGGCCATATTCAGGTGACGGAAATGGCTTCGGGCGGGGTTGGCATCGGCTT
GGTGGCGACCGGCCTGACCCCGGGGGTTCATAGCTTCCATATCCATGACAAGGGCGTCTGTGATCGGGCGGTGACATTCG
AGACCGCCGGCGGGCATTTCAACCCGACGGGCAAGGCCCATGGCTGGAACAACGCCGCCGGCCCCCATGCCGGGGACCTG
CCCAATATCCTGGCCGATGGCCGGGGCAAGGCGACGGCCGGTGTTCTGACCCATGACGTGACCCTGCGTCCGGGGGTCGC
CAACAGCCTGTTCGACGCCGACGGGTCGTCCTTCGTCATCCATTCCGGGCCCGATGATTACATCAGCCAGCCCGCCGGCA
ACGCCGGAAGCCGCGTCGCCTGCGGCGTGCTGGTCCACCACGTCGCCCTCAAGCCCCAGCCCAAACCCTAG

Upstream 100 bases:

>100_bases
GGTGGCTCCGCCCCCTCCCGGGATGGGCGGACCACCCGCTTATTCACCGCTTGGCGGACCGCCGATCACCTCGACGAGGC
CGGCACCGCAGGCCGTGGCC

Downstream 100 bases:

>100_bases
TGTTTAGCCTGATCCGGGCCGCCGCTTAAATCGAGAACGAGGTCCCGCAGCCGCAGGTGCTGGTGGCATTGGGATTGCGA
ACGGTGAAGGCGCCCCCCTC

Product: copper/Zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLINTKGETIGHIQVTEMASGGVGIGLVATGLTPGVHSFHIHDKGVCDRAVTFETAGGHFNPTGKAHGWNNAAGPHAGDL
PNILADGRGKATAGVLTHDVTLRPGVANSLFDADGSSFVIHSGPDDYISQPAGNAGSRVACGVLVHHVALKPQPKP

Sequences:

>Translated_156_residues
MLINTKGETIGHIQVTEMASGGVGIGLVATGLTPGVHSFHIHDKGVCDRAVTFETAGGHFNPTGKAHGWNNAAGPHAGDL
PNILADGRGKATAGVLTHDVTLRPGVANSLFDADGSSFVIHSGPDDYISQPAGNAGSRVACGVLVHHVALKPQPKP
>Mature_156_residues
MLINTKGETIGHIQVTEMASGGVGIGLVATGLTPGVHSFHIHDKGVCDRAVTFETAGGHFNPTGKAHGWNNAAGPHAGDL
PNILADGRGKATAGVLTHDVTLRPGVANSLFDADGSSFVIHSGPDDYISQPAGNAGSRVACGVLVHHVALKPQPKP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=131, Percent_Identity=35.1145038167939, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI4507149, Length=122, Percent_Identity=38.5245901639344, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787934, Length=148, Percent_Identity=36.4864864864865, Blast_Score=72, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71981876, Length=151, Percent_Identity=37.7483443708609, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71981879, Length=151, Percent_Identity=37.7483443708609, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17554806, Length=121, Percent_Identity=37.1900826446281, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17136496, Length=123, Percent_Identity=36.5853658536585, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 15863; Mature: 15863

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLINTKGETIGHIQVTEMASGGVGIGLVATGLTPGVHSFHIHDKGVCDRAVTFETAGGHF
CEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCC
NPTGKAHGWNNAAGPHAGDLPNILADGRGKATAGVLTHDVTLRPGVANSLFDADGSSFVI
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEECEEECCCCCCCEECCCCCEEEE
HSGPDDYISQPAGNAGSRVACGVLVHHVALKPQPKP
ECCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLINTKGETIGHIQVTEMASGGVGIGLVATGLTPGVHSFHIHDKGVCDRAVTFETAGGHF
CEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCC
NPTGKAHGWNNAAGPHAGDLPNILADGRGKATAGVLTHDVTLRPGVANSLFDADGSSFVI
CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEECEEECCCCCCCEECCCCCEEEE
HSGPDDYISQPAGNAGSRVACGVLVHHVALKPQPKP
ECCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]